Silurus meridionalis (southern catfish): 124392933
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Entry
124392933 CDS
T08004
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124392933 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124392933 (thoc5)
03041 Spliceosome [BR:
smeo03041
]
124392933 (thoc5)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124392933 (thoc5)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124392933 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
DUF2542
ANGEL2_N
Motif
Other DBs
NCBI-GeneID:
124392933
NCBI-ProteinID:
XP_046716185
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All DBs
Position
10:complement(8413835..8425710)
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AA seq
684 aa
AA seq
DB search
MSLDPLKKRKTKVIRSDGGTPETKRARGEGEQDVRTYNEEVELESRDHEQDYILYKNTCE
ALATLMSEIQELKASGAKEGSVEVEAKRRQGCVHFITLKKLNRLSHMRLKKARDQTHEAK
QKVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSVEEFFKEAPAEISRPHLTK
DDPHQLTLARLDWELEQRKRLAEQYKSSLCTKEKILKGIESKKEYLSSLQPGLHAIMQAS
LPVQEYLSMPFERVQKQAEVARHLPPPLYVLLVQASAYGQACDKNLSVSISGDVDEAKAL
SRPPEDSQDDESDSDAEEEQQNTKRRRGTVGVQLDDKRKEMLKRHPLSLCLELKCKDGSV
LHLFFYYLMNLNILTVKAKVSASTDLSGAISAGELLNPESLLNCLYASDDGQETPNPTNR
YQFDKVGITTFADYVSDLGHPYIWVQNLGGLQFSRETPQVNGARSSLSASHMENTMKLLR
GRLLSRLALHKQFSSLEHNIVPVSTECQHLFPAKVVSHLACWTMMSHEDFIELNFVQDVV
KAGLVRETDLFFMAIVERGTAHLQAAVVLNPRYPDVTPLFSLSLHWKGERSGRTDDNLRA
IESEVNVYKSELQGPRPGLQLLTNQIQRLCVCLDVYLETESQVCDGSEGPREFPREKMCL
RSTRGPNRLKPFKFNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccttggacccactaaaaaaacgcaagaccaaagtgatccggagtgacggcggcaca
ccggagactaaacgggctcggggtgagggagagcaggatgtgcgtacatataatgaagaa
gtggaactggagagccgagaccatgaacaggattacatactgtataaaaacacctgtgag
gctctggctacactcatgagtgaaatccaagaactgaaagccagtggagctaaagaaggg
agcgtagaggttgaagcaaaacgcaggcaagggtgcgttcacttcatcactctgaagaag
ctgaatcgtctgtcacacatgagactgaagaaggcacgggatcagacgcacgaggcgaag
cagaaggtggatgtgttgcacctacagcttcagaatctcctctatgaagtcatgcatctt
cagaaagaaatcggcaaatgcctcgagttcaagtcccagcatgaagagatagagttagtg
agtgtggaagaattctttaaggaggcaccagctgaaatctcccgccctcatctcactaaa
gacgacccacaccagctcacactcgctcgactggactgggaactggaacagagaaaaagg
ttggctgagcagtataagagctccttgtgcactaaggaaaagatcttgaaagggattgag
tcgaagaaggagtacctgagcagtcttcagccaggcctacatgccatcatgcaagcatct
ctgcccgtgcaagagtacttgtccatgccgtttgagcgtgtgcagaaacaggctgaggtt
gcacggcaccttcctcctcctctttatgtgctgcttgtgcaggccagcgcttacggacaa
gcctgtgacaagaatctgtctgtgtctatcagtggagatgtggacgaagccaaggctctt
tccagaccacctgaggattctcaagatgacgagagtgattctgatgcagaggaggaacaa
cagaatactaaaaggcgacgaggcactgtcggggttcagcttgatgataagcgtaaagaa
atgctgaaacgacatcctctctcgttgtgcttagagctcaagtgtaaagatggcagtgtg
ttgcacctgtttttttactacctgatgaacctcaacattcttactgtgaaagcaaaagtt
tcagcctccacagacctttccggagccatcagtgcaggggagctactgaacccagagtct
ctcttgaactgcctgtatgcttccgatgatggccaagaaacccccaaccctaccaaccgc
tatcagtttgacaaagtgggcatcacaacctttgctgattatgtgtctgaccttggacat
ccatacatctgggtgcaaaatcttggaggattacaattttccagggaaaccccacaggtg
aatggggctcgcagttctctcagtgccagtcatatggaaaacaccatgaagcttctaaga
gggcgcctgctgtctcgtctggctttgcacaaacagttcagctctctggagcacaacata
gttcctgtgtccaccgagtgccagcatctctttccagctaaagtggtctctcatctggct
tgctggactatgatgagccacgaggattttattgagttgaactttgtccaggatgtggtg
aaagctggtctggtacgggagactgacctgttcttcatggctatagtggaaaggggaaca
gctcatcttcaggctgcagtggtgctaaatcctcgctatccagatgtcacccctctcttc
tcactttcactgcactggaaaggagagcgtagcggccgcacagacgataacctgcgggcg
atagagagtgaagtgaatgtgtacaagtctgaactccagggaccgcgaccaggcctgcag
ctactgaccaaccagattcagcgtctgtgtgtgtgtctggatgtttatctggagaccgaa
agccaagtctgtgacggctctgagggccccagagaattcccaagggagaagatgtgctta
cgctctaccaggggacctaatcgtctgaagccttttaaattcaaccaccctcagggcttt
tttagtcaccgttaa
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