KEGG   Silurus meridionalis (southern catfish): 124393040
Entry
124393040         CDS       T08004                                 
Symbol
smx5
Name
(RefSeq) smx5 isoform X1
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03018  RNA degradation
smeo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124393040 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124393040 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smeo03019]
    124393040 (smx5)
   03041 Spliceosome [BR:smeo03041]
    124393040 (smx5)
Messenger RNA biogenesis [BR:smeo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124393040 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     124393040 (smx5)
Spliceosome [BR:smeo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    124393040 (smx5)
 Complex C
  U2 snRNP components
    124393040 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 124393040
NCBI-ProteinID: XP_046716304
LinkDB
Position
1:23820064..23826785
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttctactcgttcttcaaatccttggtgggtaaagatgtggtggtggagttaaag
aatgacttgagtatatgtggaaccctgcactcggtagatcagtatctgaacatcaaactc
acagatattagtgtcactgaccctgaaaagtatcctcacatgttgtctgtgaaaaactgc
ttcatccgggggtcagtggtgaggtacgtccagctcccggcagatgaggtggacacacag
ctgttacaggatgcagcgcgtaaagaagccatgcaacagaaacaatga

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