Silurus meridionalis (southern catfish): 124393093
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Entry
124393093 CDS
T08004
Symbol
opn4xa
Name
(RefSeq) opsin 4xa
KO
K04255
r-opsin
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
smeo04030
]
124393093 (opn4xa)
G protein-coupled receptors [BR:
smeo04030
]
Rhodopsin family
Vision
Opsin
124393093 (opn4xa)
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Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srx
7TM_GPCR_Srv
Ilm1
Motif
Other DBs
NCBI-GeneID:
124393093
NCBI-ProteinID:
XP_046716386
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All DBs
Position
11:8534815..8551976
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AA seq
457 aa
AA seq
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MDLGYYRKVDVPDHAHYIIAFFVGVIGAVGVIGNALVLYAFFCNKKLRSTPNYFIVNLAV
SDFLMAITQSPIFFINSLYKEWVFGKTGCKIYAFCGALFGITSMINLVAISIDRYIVITK
PLQAIRWTSKRRTLISILLVWIYSLAWSSAPLLGWSSYIPEGLMTSCTWDYVTSTPANKS
YTLMLCCLVFFIPLGIISYCYVFMFLAIRKTSRDVESLGTQMRNTTLVQQQSMKREWKLA
KIAFVVIVVYVLSWSPYAFVTLIAWAGYSSILTPYSKAVPAVIAKASAIYNPFIYAIIHA
NYRDTLAENVPCLHFLNKPPRKQCVPGLNSDFSLKNSVLSMQSSGSSSKFQSMTSVFTGH
TVFNDAMLDQLAQQSSLLRSSQSDTQIIEKEQRNHIQKEINFKNYLAQEKPIILDGISLS
ICDQDLLESANMAIMPLLMRSQGQDNKEDSGQEKKII
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggacttggggtactacagaaaggtggacgttccggaccatgcgcactacatcatagcc
ttctttgtgggagtcatcggggctgtgggtgtcatcggaaatgcacttgtcttgtacgca
ttcttctgtaacaaaaaactacgctctacaccaaactactttattgtcaaccttgctgtg
agcgacttcctcatggccatcacccagtcgcccatctttttcattaatagtttgtataag
gagtgggtgtttggaaaaacagggtgtaagatttatgccttctgtggtgctttgtttggc
atcacttccatgattaacctggtggccatctccatcgaccgctacatagtaatcaccaag
ccactgcaggcaatcaggtggacctctaagcgtcgaacgctcattagcatcctgctagta
tggatttactcactggcctggagttcagcacccttgcttggatggagctcctatatccca
gaaggcctcatgacttcctgcacctgggactatgtcacttcaactccagctaataaaagc
tacacgctcatgttgtgctgcttagtcttttttatcccgttgggcatcatatcttactgc
tatgtcttcatgtttctagctattcgtaaaacaagcagagatgtagagagcctgggtaca
cagatgaggaataccacactggttcaacagcagtccatgaaaagagagtggaaactggcg
aagattgcctttgtggtcattgtcgtgtatgtgctgtcctggtcaccctacgcctttgtc
actctcatcgcctgggcagggtacagcagcatcctgacaccgtattccaaggcagtgcct
gcagtcatagctaaagcctctgccatttataatcctttcatctatgctatcatccatgcc
aattacagggacactctggctgagaatgtgccatgtctgcactttttgaacaagcctcca
cgtaagcagtgtgtccccggtttaaacagtgatttttcattaaagaattcagtcctcagc
atgcaatcttctgggtcaagctcaaagtttcaatcaatgacttcagtgttcactggacac
acagtttttaatgatgctatgttggatcaattggcccagcaatcttcattgctcagaagt
tctcaatcggatacccaaattatcgagaaggagcagagaaatcatattcagaaggaaatt
aacttcaagaattacctggctcaagagaagccaatcatcttagatggaatctcactgagc
atctgtgaccaagatctgctggagtcagcaaacatggccatcatgcctcttctcatgaga
agccaaggacaggacaacaaggaagacagtgggcaggagaaaaaaatcatttga
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