Silurus meridionalis (southern catfish): 124393096
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Entry
124393096 CDS
T08004
Symbol
smarcad1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1b
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124393096 (smarcad1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124393096 (smarcad1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
HHH_3
Motif
Other DBs
NCBI-GeneID:
124393096
NCBI-ProteinID:
XP_046716394
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All DBs
Position
11:complement(3124219..3142589)
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AA seq
931 aa
AA seq
DB search
MRNKDEPEILADCTDNTVPETPEAKRPSKPGPVKPSDPALMDSASSDSEVEISGSSMITI
GPGKSNTTSTQDLYMLYEEENEAREAKMETSDHESREKETETKHEHASSVKTSGNGDSVC
KRRQEDMNDDSQESNMSSKKRRESITDDSADEGPEPSWREQESMVKKLQRNFPHLNKEEL
RDVLHEHSWVIEDALEALRMFSEHVVECSSDDSDSEPVPSSEIKSTNPTSNPGTSAIPRV
PVRPLNGDRDARAMRRRNTREIQKQDSSSEDNTSDFEASPRPLDMDSDSDEADEKLPRLK
AQILVFFQKATVDELTLIAGCSLKKAQKIIELRPYQTWSDLDEVLHRGNGLSADLLAGCR
EVLREREVVQGLMVKCEEISRKMTGLVQKGLGSMRQPHILTSTFELKPYQLIGLSWLTLL
HKNQLNGILADEMGLGKTIQVISFLAQLYQEGNRGPHLITVPSSTLDNWVRELNLWCPSF
KVLVYYGSVEERKCIRYEILNEEVDYSIIVSTYNLAIGNSSDRSLFRKLKLEYAVFDEGH
MLKNMSSLRYRHLMGINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQIAKMFS
MKSSEEQSSFEKDRIAHAKLIMKPFILRRIKSEVLKQLPAKEEQTEFCAMSEKQQQLYDT
LFSKLKRAGSTEKRELTNVMMQLRKMANHPLLHRQYYSSRRLAAMSKLMLKEPSHRDSDP
VLIEEDMTVMSDFELHRLCQQYPTLVDHQLTTEQLLDSGKLHLLTPLLTDLKEQGHRVAL
FSQFTMMLDILEVLLKHHKHRYIRMDGSTPMSNRIVLIDQFNTDLDIFVFLLSTRAGGLG
INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTRNVKVIKLISKDSIEDAMLRIGQRKL
KLEQDMTATEEGDEDTIPDDMASLLKASLGL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacaaagatgaacccgaaattcttgcggattgtaccgacaatacagtacctgaa
accccagaagccaagcgtccatctaagcccggccctgttaaaccctccgatcctgcactg
atggactctgcgtcttctgattcggaagtggagatatcaggaagctctatgatcacgata
gggccggggaagagcaacacaacttcaactcaggacctgtacatgttgtatgaggaagag
aacgaagcaagagaggcgaagatggagacgtctgaccacgaaagccgggagaaggagacg
gagaccaaacatgaacacgcttcatcagtgaagacatctggaaacggagattcagtgtgt
aaaaggaggcaagaggacatgaatgacgattcccaggaaagcaacatgagcagcaagaag
aggcgcgagtcaattactgatgattcggctgatgaaggacctgagcccagctggagggag
caggagagcatggtgaagaagctgcagcgtaatttcccccatctcaacaaggaggagcta
cgagacgtgcttcatgaacacagctgggttatcgaggatgccctggaggcactgcgcatg
ttctcggaacacgtggtggaatgcagcagcgatgactctgactcggaacccgtgccttcc
tctgaaatcaaaagcacaaatcccacgtcgaaccccggcacctctgcaatacctcgggtc
cctgtcagacccttaaacggcgacagagacgctcgggcgatgaggagacggaacacgaga
gaaatccagaagcaagacagcagctcggaagacaacaccagtgacttcgaggcgtcgccc
agacctttggacatggactcggattcagatgaagccgatgagaagcttcccagattaaag
gctcagatcctggtcttcttccagaaggccacggtggacgagctgactctgatcgcaggc
tgctctttgaagaaagctcagaaaatcattgagctgagaccgtatcagacgtggagcgat
ctagatgaagtcctacacagaggtaacggcctgtctgcggatctgctcgctggctgtcga
gaggtcctgagggagcgagaggtggtacaggggcttatggtcaagtgtgaggaaatttcc
agaaagatgaccggattggtgcagaagggtctgggatcgatgaggcagcctcacatcctt
accagcacatttgagctgaaaccgtatcagctgattggcctgagttggctgaccctgctt
cacaagaaccagctgaatggaatcttggcggatgaaatgggtttgggaaagaccatccaa
gtcatttcattcctggcacagctttatcaggaagggaacagaggaccgcatctcatcaca
gtgccttcttccacgcttgataactgggttcgtgagcttaacctttggtgcccgagcttt
aaagtgctggtttactacgggtccgtcgaggaacggaaatgcatccgctatgagatcctg
aacgaagaagtggattatagcatcatcgtctcgacatacaacctggcaatcgggaactcc
agcgatcgcagcctgttccgcaagctcaaactggaatatgctgtgttcgacgaaggacac
atgctgaagaacatgagctcactgcgctatcgccatctcatgggcatcaacgccaaatat
cggctgctgctgactggaacgccgctgcagaataacctcctagagctgatgtctctactt
aacttcatcatgcccaacatgttctccagcagcacctcacagatcgccaagatgttctct
atgaaatcctcggaggagcagagcagctttgagaaggaccggattgctcacgccaaactc
attatgaaaccctttatcctgcggcgtatcaaaagcgaggtcctgaagcagctgcctgcc
aaggaggagcagactgagttctgcgccatgagcgagaaacagcagcagctttatgacaca
ctgttcagcaaactaaagcgtgccggcagcacagagaaacgggagctgaccaatgtcatg
atgcagctgaggaagatggccaatcacccgctcctgcaccgccagtattattccagcaga
cgcctcgcagccatgagcaaactaatgctcaaggagccgagtcaccgtgactcagaccca
gttctgatcgaggaggacatgactgtgatgtcagatttcgagctgcatcgtctgtgccag
cagtaccctacgctggtggaccatcagctgaccacagagcagctgctggactcagggaag
ctccacctcctcacaccccttcttacggacctcaaagaacaaggtcaccgcgtggccctt
ttcagccagttcaccatgatgctggacatcctggaggtgctgctcaaacaccacaagcac
aggtacatccgaatggacggttccacgccgatgagcaacaggatcgtgctgattgaccag
tttaacacggacctggacatctttgtgttcctgctgtcgactagagctggaggactcggc
atcaacctgacgtccgctaacgtcgtcatcctgcacgacatcgactgcaatccctacaac
gacaagcaggccgaggaccgctgccaccgtgtcggacaaaccaggaatgttaaagtgatc
aagctgataagcaaagactctatagaggacgccatgcttcgcatcggccagaggaaactc
aaactggagcaggacatgaccgccacagaggaaggcgatgaagacaccattcctgatgac
atggcctccctcctgaaagcttctctgggactctga
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