Silurus meridionalis (southern catfish): 124393110
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Entry
124393110 CDS
T08004
Symbol
psd3l
Name
(RefSeq) LOW QUALITY PROTEIN: PH and SEC7 domain-containing protein 3
KO
K12494
PH and SEC7 domain-containing protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124393110 (psd3l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124393110 (psd3l)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Arf GTPases and associated proteins
Arf associated proteins
124393110 (psd3l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
PH_9
PH
Motif
Other DBs
NCBI-GeneID:
124393110
NCBI-ProteinID:
XP_046716411
LinkDB
All DBs
Position
11:complement(19943540..20060433)
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AA seq
1262 aa
AA seq
DB search
MGDHHQVKTSFLFIQLQSPSREQQCQPSAGSRSLDTPEEVSSATAAGDVTLATVGDLESI
YTREQEIQPALDDTLLQSVDSKPIPEEAPSPPFAAGITKISSSDSERIDITSAKQGISST
SSCERLGDKTDSQECFSYDFNKSEKDHFVDRFVESSVRLSGQDPTENMSEVVQPPSLEEN
FPKPSIASRASFLYPSTAPHGLNPTPTGVPPASSFPSTHRPPHSGWVHSAKHKEETAAQE
KAPTMLSKNPERTTFVSAVIQRSSKLYEYVYKPALSSTEVTSDAEKSSENLSLAVVGAAK
PNQTALAAESLHPEKEPSAMNRSSAPEKAETFVWINGSSSHAKSVAKAKYEFFFGKTRNT
SPGTASCDSDPQLEDDIFTSSNPAIQEDELDETSVFQEIDRELAELLSGLTPRTRDVAAA
EQSIQSGDATASDMIPCNGTPPSPPGTAPELQNGTSDSEQKEKLSDLTFGLWCEALIQDP
SSAQELHSASPVLDPDARNAATSQHKLAPVPVMEKKEGSESGASSPRLLDVSLDESSKIL
SEIPGIFSAFLDGAKVQEKPHKKLRFVEDQADADGFLNGEAEEKEPMTQDMEKPSQDNVL
RAAVPVLCVSQAAEIRSVRRVEGRASKSEEATDMFSSQFESILESERLCATLYSSLDSLE
ALSSSADETDAQAEPAHTHRVVEMPLTPMIQQRLKESSLFMEARIRHEELLSVSATGKSG
KADLEVTSSFLNTSAGHSRSGHGHGALANGTMGKDTSDWLQSWTSSDEGLKDVLSDWDLD
MGSTEQQKDSNDTLNNGHRSDQEAARRLARRLYHLEGFRRCDVAKHLGKNNDFSKMVAEE
YLXFFEFTGMTLDQSLRSFLKAFALMGETQERERVLIHFSNRYYQCNPTILASQDEVHCL
TCALMLLNTDLHGQNIGKKMTCQEFITNLEGLNAGQDFPRDLLKALYNSIKNEKLEWAID
GDELKKSLSELADTKNDNAHTKSISRISSGSNPFLDIAHDPNAAVYKAGFLARKIHADMD
GKKTPRGKRGWKTFYAVLKGMILYLQKDEFKPEKSLSDEDLKNAISVHHALAIKAVDYEK
KPNVLKLKTADWRVFLFQAHSPEEMESWIRVINSVAAMFSAPSFPAAIGSQKKFSRPLLP
ATTTRMSQDEQLKSHEAKLKHVSTELAEHRSYPPDRKVKAKEVDEYRLKEHYLEFEENRY
ETYVKLLKDGVRELLGAKENDAALKKSQSSPHLNQESQPAAAKIKRNTSERKDYRPETPK
VT
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgggagatcatcatcaggttaagacttccttcctttttatccaactgcagtcaccctcc
agagaacagcagtgccaaccttctgctggctctcggagcttagacacaccagaggaagta
tcatcagccacagcggctggagatgtcacactggccacagtcggagacttagagagcatc
tataccagggagcaagaaattcaacctgccttagatgataccttattacagagtgtggat
agtaaacctattccagaggaagcaccttcaccaccatttgctgctgggattacgaagatt
tcttcttcggattcagaaaggatagatattacgtcagctaagcaaggaatcagttcaaca
tccagctgtgaacgtttaggagataaaacagattctcaggagtgcttcagttacgatttc
aacaaatctgagaaggaccactttgttgaccgctttgttgaatcttctgttcggctctcg
ggtcaggaccctactgaaaatatgagtgaagtggttcagcctccatcacttgaggaaaac
tttcctaaaccttctatagcttccagagcgagtttcctttatccgtcaacagcaccacat
ggtctcaacccgacgcccactggagtccctccagcctctagttttccgagcacacatcgg
ccaccgcacagcggctgggtgcacagtgccaagcacaaggaggagactgctgctcaagaa
aaagcaccgacaatgcttagcaagaaccccgagaggaccacgtttgtctcagctgtcatc
cagaggtcctcgaagctctatgagtatgtctacaaaccagcacttagttctactgaagtg
acctctgatgctgagaagtcttctgaaaacctttctctggctgtagtaggtgcagcgaaa
ccaaaccaaactgcactggctgcagaatctctgcaccctgaaaaggaaccgtcagccatg
aatcggtcttcagcaccagaaaaggccgaaacatttgtttggatcaacggctcctcctcg
cacgctaagagcgttgccaaggccaagtacgagttttttttcggaaagacgcgcaacact
tcaccaggcactgcttcatgcgactcggacccccagctggaggacgacatattcacaagc
tctaaccccgccatccaggaggatgagctggacgagacgtcggtctttcaggagatcgac
agagagttagccgagttactgagcggcctcacgccccgaacccgtgatgttgcggcggcc
gagcaaagcatccaatcaggagacgccaccgcatcagacatgatcccctgcaacgggacg
cctccttctcccccgggcaccgccccagagctccagaacggcacatcggattccgagcag
aaagaaaagctgagcgacctgacgttcggcttgtggtgtgaggcgctgattcaagacccg
agttcggctcaggagctgcacagtgcgagccccgttctcgacccagacgccaggaatgcg
gccacaagccaacacaaactcgcgccggtgcccgttatggaaaagaaggagggaagcgag
agcggagcctcgtccccgaggcttctggacgtctctttggacgaatccagcaaaatcctg
tccgagatccccggcatcttcagtgccttcctggacggggccaaggtgcaagagaaaccc
cacaagaagctgcgctttgtggaggaccaggccgatgcagatggttttctaaacggagag
gctgaagagaaggaaccgatgactcaggacatggaaaaaccttctcaggacaacgtgctc
agggccgcggtgccggtgctgtgcgtttctcaagcggccgaaattcgctcagtcaggcgt
gttgagggccgagccagcaagagtgaggaggccacggacatgttcagcagtcagtttgag
agcatcctggagtcggaacggctgtgcgcgacgctctacagcagcctggactcgctcgag
gctctgtcttcctccgccgacgagacggacgctcaggccgagccagcgcacacacaccgg
gtggtcgagatgcccctcacgcccatgatccagcagcggctgaaggaaagcagcctgttt
atggaggccaggatcaggcacgaggagctgctgagcgtcagtgccaccgggaagagcgga
aaagcagacctggaggtgacttcctcttttctgaacacatccgcgggtcactcgaggagt
ggacatggacacggggctttggctaatggcacaatgggaaaggacacaagcgattggctg
cagagctggaccagcagcgatgaggggttgaaagacgtgctgtcagactgggacttggac
atgggcagcaccgagcaacagaaggacagcaacgacacactgaacaacgggcaccgcagc
gaccaggaagcagcacgacgcctggcgcgccgcctttaccacctggagggcttccgtcgc
tgtgacgtagccaagcacctggggaagaataacgacttcagcaagatggttgccgaagag
tacctcnacttttttgaattcacagggatgacattggaccagtcgctcagatcctttctc
aaagcttttgcactaatgggtgaaacccaggaacgagagcgggttttaatccacttttct
aataggtactatcaatgtaaccccaccatcctcgcctcacaagacgaagtgcattgcctt
acttgtgctttaatgctgctgaacacagaccttcatggacagaatattgggaagaagatg
acatgccaggaattcatcaccaacctggaaggcttgaacgcgggacaagatttcccccga
gatctcctaaaggcattgtacaactcgatcaagaacgagaagctggaatgggcaattgac
ggggacgagttgaagaagtcgctgtctgaacttgcggacaccaagaacgacaacgcccac
accaagagcatcagcaggatcagcagcggcagcaatccgttcctggacatcgcccatgat
cccaacgctgccgtttacaaagcaggcttcctggctcggaaaatccacgccgacatggac
ggcaagaaaacccctagagggaagagaggctggaagacattttatgctgttctcaaaggc
atgatcctgtatttacagaaggacgaatttaaaccagagaagtccctctctgatgaggac
ctgaagaacgccatcagcgtgcatcacgccctcgcaataaaggctgtggactacgagaag
aagcccaacgtgctgaaactgaagacggccgactggagagtcttcctcttccaagcccat
agccccgaggaaatggagtcctggatcagagtcatcaactcggtggctgccatgttttcc
gcaccttcttttcccgccgccatcggatcgcagaagaaattcagccgcccgctgctgcca
gccaccaccaccaggatgtcacaggacgagcagctgaagtcgcacgaggccaagctgaag
cacgtctctacagaattagccgagcacaggtcctacccccccgacaggaaggtcaaagcc
aaggaggtggacgagtaccgcctgaaagagcactacctggagtttgaggaaaaccgctac
gagacgtacgtgaagctgctgaaagacggcgtgagagagctcctgggtgctaaagagaac
gatgcagctctgaagaaatcccagtccagcccacacctcaaccaggagtcccagccggct
gcggccaaaatcaagcgcaacacgtccgagaggaaggactaccgtcccgagacgcctaaa
gtcacatag
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