Silurus meridionalis (southern catfish): 124393139
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Entry
124393139 CDS
T08004
Symbol
xrcc4
Name
(RefSeq) DNA repair protein XRCC4 isoform X1
KO
K10886
DNA-repair protein XRCC4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124393139 (xrcc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124393139 (xrcc4)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124393139 (xrcc4)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRCC4_CC
XRCC4
XRCC4_C
XLF
Fib_alpha
Shugoshin_N
P_gingi_FimA
Tektin
GEMI5_RBS
Rab11-FIP3
HAP1_N
Motif
Other DBs
NCBI-GeneID:
124393139
NCBI-ProteinID:
XP_046716526
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All DBs
Position
11:12279075..12292489
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AA seq
349 aa
AA seq
DB search
MIQATSLVMKVTVREISIASTPETTFYLKLEWTKNLGAGFVVLLCDGVSAWSGEVSEEDV
SREAQEMEMPKEKYVNDLHLILTGEGQPDQRYSFNLTPRHSGNSTLQLSYEKVQSDMSFK
FGMVELLPVPEPTKVIKELISYGLDCSARLQIKIQDVHKENQRLRNEQENITTEMERYIE
EKETMERELYNRFVVILNGKKAKIRTLHEMIKQLQNNIKDKNHRCKKDEVCHGVNEHADE
KSEESYYGYTTDEEEDGNTKTNNQISINQELTSNPIDDSLNDIADVAPSRKRRQRAVTPL
GSQTKRPALEQRQPLRNDLLEEAKSEVSKVPFQQPIQASPDPDDLFEDI
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgattcaagcaacttcattagtcatgaaggtcactgtacgtgaaatatccatagcgtct
acacctgagaccacattctacctcaaattagaatggaccaaaaaccttggagctggtttt
gttgttctgctttgtgatggtgtgtctgcctggagtggtgaagtttcagaggaggatgtc
agcagggaggcccaggagatggagatgccgaaagagaaatatgttaatgatctgcacctg
attttgactggagagggacagccagatcagcgctacagttttaatttgacacccaggcat
tctggaaactctacgttgcagctatcttacgagaaagttcagagcgacatgtcatttaag
tttggcatggtggaactgttacctgtgccagagcccactaaagtcataaaggaactcata
agttatggcttagattgcagtgctcgcctgcaaatcaagatacaagatgtgcacaaggag
aaccagagactaagaaatgagcaggaaaatataactacagaaatggagagatatatcgaa
gaaaaagagacgatggagagagagctgtacaaccgctttgtggtaattcttaatgggaaa
aaggctaagatacgcactttacatgagatgattaaacagctgcagaataatataaaagac
aaaaaccacagatgtaagaaagatgaagtctgtcatggagtaaatgagcatgcagatgag
aaatctgaagagagttactatggatacaccacagatgaggaagaggatgggaatacaaaa
actaataaccagatatctatcaatcaagaactgacaagcaacccaattgatgacagccta
aatgacattgcggatgtggcaccaagccgcaaacggcgtcagcgtgcagttacacccttg
ggatcccagacaaaaagaccagcgcttgagcagagacagcccttacggaatgatctgctt
gaagaagccaaatcagaagtgagtaaagttccatttcagcagcctatacaagccagtcca
gaccctgatgacctatttgaagacatctaa
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