Silurus meridionalis (southern catfish): 124393371
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Entry
124393371 CDS
T08004
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
124393371
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124393371
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
ROBO family
124393371
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_VEGFR-1-like_5th
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Med3
Kre9_KNH
DUF7908
Motif
Other DBs
NCBI-GeneID:
124393371
NCBI-ProteinID:
XP_046717096
LinkDB
All DBs
Position
11:19353979..19557995
Genome browser
AA seq
1648 aa
AA seq
DB search
MPGAVLLIIAALLGSAGSEKPENSITDIGGQNGPRESTTSAPPSDHDEDNSPGYTGSRLR
QEDYPPRIVEHPSDLIVSKGEPATLNCKAEGRPAPTVEWYKDGERVETDRDNPRSHRMLL
PSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPADVMVA
EGEPAVLECQPPRGHPEPTISWRKDGANINDRDERITIRGGKLMITNARKSDAGKYICVG
TNMVGERESEIAELTVLERPSFTRRPTSVVVLADESVEFRCEARGDPLPTVRWRKEDGEL
PKGRYEILEDHTLSLRRVTPADVGSYSCLAENMVGKAEASATLTVHVMSVPPTFVIRPRN
QVVGVGRTVTFQCEAMGNPQPAIFWQREGSQNLLFSYQPPQPSSRFSVSQTGDLTITDVQ
RADGGQYSCQALNIAGSVITKALLEVTDVVSDRPPPVIRQGPENQTIAVDGTVLLTCITT
GTPAPTVLWRKDGVLVSTHDSRISQLDTGTLQIRYAKLSDTGVYTCVSTSPSGEASWKAY
LAVEEFGVAVQPGRPTDPNLIPSAPSKPEVIDVTRTSVTLTWKANTNGATPTSYVIEAFS
HASGSSWVTLADHVKSETFMLKGLKPGAVYLFLVRAANAYGLSDPSPITDAIRTQDTPPT
IQGMDHRQIQKELGDVVVHLHNPTILSSSSVRVQWTVEQQSQYIQGYRVMYRPSSESGEA
RSQWGVFEVRTPGEDGAVVPQLKKGVTYEFKVRPFFDEFQGADSEVKMVRTLEEAPSGAP
RGVTVTKSDPNGTAILVAWQPPPEDEQNGVVQEYKIWCLGNESRYHVNRTVDGSTFSVVI
PSLSPGIRYSVEVAASNGAGPGVKSDITFFQLDSSGQMLDTFNDLDTFSNISDVVKQPAF
IAGIGATCWVVLMIFSVWLYRHRKKRSGLSSSYAGIRKVPSFTFTPTVAYQRGGEAVCSA
GRPGLLNMGDSGNQPWLADSWPNTCANHKDCSINCCNGGNGTSDSNLTTYSRPADCIANY
NSQLDSKQGVLLGSDSAVYSDVDLSNKLNEMKTFNNPSMCYMGPGGSPPTPYEPTPYATT
QLIQSNIMNKNSGAGPGDFCDKRWKPQQPKPPELPSQLQFNVMEQNRLNKDHYRGGEVSL
PATIPYNQGNEHSSAGSYHSSDRASNSTSGSQNHKKGTRTPKLSKQSAVNWAEPLPPPPI
NPPGCRSSEDYLQPMDKSFDPDPQKIQSRMYLHQGETEEEEEEQENLVRCPTPPVRGAAS
SPLGISYSHQPTVTLTSSPQGDLNNHQEDRRQHTSPPRPLPALSPSHTYTYTDGDDEDCD
QTDGESGQRLYQQNPGSHYQAQQQVHLPRRLRLHRGLEQTPASSTGDLESSVTGSMINGW
GSASEEDNGSSGRSSAISSSDGSFFTDADFAQAVATAAEYAGLRVAHYPGAGPEDIGRGG
QRYHIGHRPSSPVSTDSNMSTAVMQRKPHKRHKQHAAGHQSQQQQQQQTDEFTDDQSMPL
SPCSVAMKTTNHGSRCGYEERGATLPRMGCGESRDRRGSAGGYRTREASAERRGEPDKHR
NTHGGKGAGKTRQHTVAEDIPPYNRPSFPTAQGQRETPSSSSSISSRGSGGRRRGEAALG
AHKNHNDTGLPSLGTFSHQEEELELLES
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgccaggtgccgttctcctcatcattgccgctttactgggatcggctggctcggagaaa
ccagagaactccatcacagatatcggtgggcagaatggaccacgtgaatcaaccacatct
gctccaccttctgaccatgatgaagacaactcacctggttacactggatctcgtctccgc
caggaggactatccaccgcggattgtggagcacccatcagacctgatcgtgtcgaagggc
gagccggctacgctgaactgtaaggccgagggccgtccagcacccactgtcgagtggtat
aaagacggtgagcgcgtggagacggacagggacaacccacgctcgcaccgtatgctcctg
cccagtggctcgctcttcttcctacgcatcgtgcacggccgccgcagcaaacccgacgac
ggcagctacgtgtgtgtggccaggaactacctgggggaggcggtcagccacaacgcttca
ctggaagtagctatcctgcgtgatgattttagacagaatcccgctgatgtgatggtagcc
gaaggggaaccggctgttctggaatgtcagccccctcgtggccacccagagcccaccatc
tcctggaggaaggatggagccaacataaacgaccgagacgagcgcatcacgatccgaggt
ggaaagctgatgatcacgaatgcaagaaagagtgatgctggaaaatacatctgtgtggga
accaacatggtgggagagcgcgagagcgaaattgctgaactgactgttttagagaggccc
agcttcacaaggaggcccacaagtgtagtggtgctggctgacgagagcgtggagtttcgc
tgcgaagcccgtggagatccgcttcccactgtccgctggaggaaagaggatggagaatta
cccaaggggaggtacgaaatccttgaagaccacacgctaagcttgcgacgcgtcacgccg
gccgacgtgggttcctacagctgcctagccgaaaacatggtgggcaaggctgaggcttct
gctacgctgactgtgcacgttatgagtgtgccccctacgtttgtcattcggccccggaac
caggtagtgggcgtgggccgaacggtcacatttcagtgcgaggcgatgggcaacccacaa
ccggccatattttggcagagagaaggaagccagaaccttctgttctcctaccagcccccg
cagccctccagccgtttctccgtttctcagacgggcgacctcaccatcacagacgttcag
cgtgccgatggaggacaatacagctgtcaggcactcaacatcgccggcagcgtcatcacc
aaggccctgctggaggttacagatgtggtttcagatcgcccccctccagtgattcgccaa
ggcccagagaaccagaccatcgctgtagatgggacggtgctgctgacatgcataaccacc
ggaactcctgcaccgacggtgctctggaggaaggacggggtgctggtgtccacccacgac
tcacgcatctcccagctggacaccggaactctgcagatccgctatgccaagcttagcgac
actggagtgtacacttgcgtgtccaccagtcccagtggggaagcatcatggaaagcatac
ctggctgtagaagagttcggagtggcggtccagcccggcagacccacagacccaaacctg
atcccaagtgcgccgtccaagccagaggtgatcgacgttactcgcacctctgttacactg
acatggaaggccaacacaaatggagccacacccacttcttatgtcatcgaggcatttagt
catgcatccgggagcagttgggtgaccctcgctgaccacgtgaagtccgaaacgttcatg
ctgaagggcttaaagcctggtgcagtgtatcttttcctagtaagggcagccaatgcttat
ggcctgagtgaccccagtcccataacggatgccatccgaacgcaagacactcctcccacc
atacagggaatggaccaccgccagatccagaaggaactgggggacgttgtggtccacttg
cacaatcccaccatactgtcatcctcctcagtcagagtgcagtggacggtggagcagcag
tctcagtacatccagggctacagggtcatgtatcggccatcgtcagagtcgggcgaggcc
cgcagtcagtggggagtgtttgaggtgcgcactcccggcgaggacggtgccgttgtacct
caactcaagaagggtgtcacgtatgagttcaaagtgcgtccgtttttcgacgagttccag
ggagccgacagcgaggtgaagatggtccggacgctggaagaggctcccagcggtgcccca
cgtggcgtcactgtcaccaagagcgaccctaacgggacggccatcctggtcgcttggcaa
ccacctccagaggacgagcagaacggagtggtccaggagtacaagatttggtgcctgggc
aatgagagtcgataccatgtcaaccgtaccgtagacggttccactttctcggtcgtcatc
cccagtctgtcgcctggtattcgctacagcgtggaggttgctgccagcaatggagctgga
ccaggggtcaagagtgacatcaccttctttcagctggactcatccggccagatgttggac
actttcaatgacctggacactttttccaacatctctgatgtggtgaagcagccagctttt
atcgcaggcatcggcgccacctgctgggtggtgctcatgatcttcagcgtttggctttac
aggcacaggaagaagaggagcggcctcagtagcagctacgcaggcattcggaaagttccg
tcattcaccttcactccgacagtggcgtatcagcgaggaggagaagctgtctgcagtgct
ggacggcctggtctactgaacatgggagattcaggtaaccagccgtggctcgctgactcc
tggcccaacacctgtgcaaatcacaaggactgcagcatcaactgctgtaacggtggcaac
ggaaccagcgacagcaacctaaccacctacagccgcccagccgattgcattgctaactat
aacagccaactggacagtaagcaaggagtgctgctcggctccgactcagctgtatacagc
gatgtagatctctccaacaaactcaacgagatgaagacctttaacaaccccagcatgtgc
tacatggggcccggaggcagcccaccgacaccatatgagcccactccttatgcaaccaca
cagctcatccaatcaaacatcatgaacaagaacagtggtgcaggacccggcgacttctgt
gacaaacgctggaagccccagcaaccgaaacccccggagctgccgtcacagttacagttt
aatgttatggagcaaaacaggctgaacaaggatcattacagagggggtgaggtcagtctg
ccagccaccattccctataaccaaggaaatgagcacagctctgcagggtcctaccacagc
tccgatagagccagcaacagcacctcagggagtcaaaatcataaaaaaggaactcgcaca
ccgaaactgtcgaaacagagtgcagtgaattgggccgagccgctgcccccacctcctatc
aacccccctggctgccgcagttctgaggactacctgcagcccatggataagagcttcgac
ccagacccccagaaaattcagagccgcatgtacctccaccaaggggaaacagaagaagaa
gaagaagagcaggagaacctcgttcgatgccccactccacctgttagaggggcagcctct
tcccctttgggaatatcctacagccaccagcctaccgtcacgctcacttcttctcctcag
ggagacctaaacaaccaccaggaagatcgcagacagcacacgagcccccctcgtccactc
ccggccctctcgccctcgcacacctacacctatactgatggcgatgatgaagattgtgat
caaacagatggtgagtcaggccagagactgtaccagcaaaacccaggatcccactatcag
gctcagcagcaggtccatctgccacgtcgcctgcgtctgcacaggggcctggaacagact
ccggcctccagtacgggagacctggagagctccgtcacggggtcaatgatcaatggctgg
ggctcggcatccgaggaggacaacggctcatccggccgctctagtgccatcagctcctcc
gatggatcctttttcactgatgctgattttgcccaagctgtagccacagcggctgagtat
gctggtctgcgagtggctcattatccaggggcagggcccgaagatattggaagaggaggt
caaagataccacattggccatcgtcccagtagcccagtgtccacagacagcaacatgagc
actgcagtgatgcagaggaaaccacacaaaaggcacaagcagcatgcagctggtcaccag
agccaacaacagcagcaacagcaaacagacgaatttacagatgaccaatcaatgcctctg
agcccctgctcggttgcaatgaagaccactaatcatggttccaggtgtggatatgaggag
aggggtgcaacattgcccagaatgggctgtggagagtccagagacaggcgaggaagtgca
gggggataccggacaagagaggcctcggccgagcgacgaggagagcctgacaaacaccgg
aacacacacggtggaaaaggtgctggcaaaacacgccaacacacagttgcagaggacatt
ccgccatacaaccggccatcattccccacagcacaggggcaaagagagacccccagctcc
tctagttcaatttcttcccggggctctgggggccgcaggcgaggggaagcagcgttagga
gcccataaaaaccataatgataccggactcccaagtctggggaccttttctcaccaggaa
gaagagttagagctgctggagagttga
DBGET
integrated database retrieval system
