Silurus meridionalis (southern catfish): 124393383
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Entry
124393383 CDS
T08004
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124393383 (vldlr)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
124393383 (vldlr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF
SGL
Mucin
hEGF
Endonuc-BglII
Motif
Other DBs
NCBI-GeneID:
124393383
NCBI-ProteinID:
XP_046717129
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Position
11:22147785..22169578
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AA seq
871 aa
AA seq
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MVVCVLGFLLLPLCLQMVGFTDGSRIECEPSQFQCGNGRCIPSVWQCDGDMDCTDGSDES
KCVRKTCAPQDFVCRNGQCLPKRWHCDGEPDCEDGSDESFELCHSRTCRMNEFSCGTGST
LCIPVSWKCDGERDCDNGEDEESCSNITCSPLEFTCASGRCVSHNFVCNGEDDCGDGTDE
FDCTLTSCGPDQFKCGNATCIPIGWVCDNDVDCQDHSDESSSHCGRNPTPSVKCSATETQ
CGSGECIHRKWRCDGDADCKDGSDERNCPPRSCRPDQFKCDDGSCIHGSRQCNGFRDCTD
GTDEENCKNLTQCRGPDKYKCRSGECIEMSKVCNKARDCTDWSDEPIKECNVNECLVNNG
GCSHLCRDLVVGYECDCTPGLQLIDHKTCGDINECLNPGICSQICINLKGGYKCECHEGY
QMNSSTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFNHQKIFW
ADLGQKAIYSAALDHNSSSHTRVIDVQMPVGIAVDWIYKNIYWSDLGSKTIAVANFNGTK
QKMLFDKDLKEPASIAVDPLSGFLYWSDWGEPARIEKSGMNGVDRQVLVETDIQWPNGIT
LDLIKSRLYWVDSKLHTLCSVDLNGDNRKKVLQSQDYLAHPFALTVFEDRVFWTDGENEA
IYGANKFTGSDVIMLASNLNEPQDIIVYHELVQLSGTNWCNEKVENGGCFYMCLPAPQIN
KHSPKYTCVCPKGQELAPDGLQCKPVASTAVPHDEERVLTHPPDAPKAQVTVQTEATERN
LSTSIHEVKSAKGSAAAWAALPVLLLVITAVGGYFMWRNWQIKNKKSMNFDNPVYLKTTE
EDLNIDINRHSGSVGHTYPAISIVNTEDDMP
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgtgcgtcctgggctttcttctcctgccactgtgtctccagatggtcggattt
accgacggctctcgaatagaatgtgagccatcacagttccagtgtgggaacggtcgctgc
atcccatctgtatggcagtgcgatggtgacatggactgcactgatgggagtgatgaaagc
aagtgtgtgaggaagacttgtgcgccgcaggactttgtttgccgcaacggtcagtgcctc
cccaaaagatggcactgcgatggagaaccggactgcgaagacggctcggatgagagcttt
gagctgtgtcactctagaacctgccgtatgaatgagtttagctgtggcacaggctctact
ttgtgcattcctgtctcttggaaatgtgacggcgagagagactgcgacaacggagaagac
gaggagagctgcagtaacatcacctgctctcctctggaattcacttgtgccagcggtcgc
tgcgtatcgcacaactttgtgtgtaatggagaggatgactgcggtgacggtactgacgaa
ttcgactgcactttgacctcgtgtggccctgaccagttcaagtgtggcaacgcgacttgc
attcctattggctgggtgtgtgacaatgacgtagactgtcaggaccattcagacgagtct
tcttcgcactgtgggaggaaccccacgccgtctgtaaaatgttcggcgaccgagacgcag
tgcggctcaggagagtgtattcaccgcaagtggcgctgcgacggagacgccgactgcaaa
gacggcagcgacgagagaaactgccctcctcgctcctgccgcccagaccaatttaagtgt
gacgacggcagctgtatccatggcagccggcagtgcaatggtttccgagactgcaccgat
ggcactgatgaagaaaactgcaaaaacctgacacagtgtagaggcccagacaagtacaag
tgtaggagtggtgagtgcattgagatgagcaaagtctgtaacaaggcccgggactgcact
gattggagcgatgaaccgatcaaagaatgtaatgtgaacgagtgcctcgtaaacaacggc
ggctgctcgcacctgtgccgtgacttggtggttggctacgaatgtgactgcacacctggg
ttacagctcatcgatcataaaacctgtggggatatcaatgagtgtttgaatcctgggatc
tgcagtcagatttgcatcaacttgaagggaggctacaaatgcgagtgtcatgagggttat
cagatgaactccagcacaggagtgtgtaaagcagtaggcaaagaaccgtgtctcatcttt
acaaatcggagagatatccggaagcttggcctggaaagacgggagtatacgcagatagtg
gagcagctgcgcaacactgtggcactagacgcagacttcaaccatcagaagattttctgg
gctgaccttggacagaaagccatctatagtgcagcactggaccacaattcgagcagccac
acgagagtgattgatgtacaaatgcctgtgggaatagcagtagactggatctacaagaac
atctactggtcagatctgggcagtaagactatagccgtggctaatttcaacggcacgaag
cagaaaatgttgtttgacaaggacttgaaggagccagcttccattgcagtggatcctctc
tctgggttcctttactggtcagactggggtgagccagccaggattgagaagtctggaatg
aatggggttgatagacaagtcctggtagaaactgacattcagtggcccaatggtattacc
ctcgatctgattaaaagtcgactttactgggtggattccaaactgcacacactgtgtagt
gtggatctcaatggagataaccggaaaaaagtcctgcagtcccaagactacctggctcac
ccttttgccctcacagtgtttgaggatcgagttttctggacagatggcgagaacgaggcc
atttatggggcaaacaagttcacaggatcagatgtgataatgctggccagcaacctgaat
gaaccacaggacatcattgtctaccacgaactcgtgcagctgtctggtacaaactggtgc
aacgagaaggttgaaaacggaggctgtttctacatgtgcctgcctgcgcctcaaatcaac
aagcactctccaaagtatacgtgtgtgtgccccaaaggtcaggagctggccccggatggc
ttgcagtgcaaaccagtggcatctacagctgttccacatgacgaagagcgggtactcaca
catcctccagacgctccaaaagcccaggtcacagtgcagacagaagccactgaaagaaat
ctcagcacctccatacacgaggtcaaatcagccaaaggatcagctgcagcctgggcggct
ttgccagtgttgttgctggtcattactgctgtcggaggatacttcatgtggaggaattgg
cagataaagaataaaaagagcatgaattttgataatccagtgtatctgaagactacagag
gaagatctgaacatcgatataaacagacactccggctcagttggacacacgtatcctgct
atttctatagtgaacacagaagatgacatgccataa
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