Silurus meridionalis (southern catfish): 124393426
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Entry
124393426 CDS
T08004
Symbol
ddx4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124393426 (ddx4)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124393426 (ddx4)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124393426 (ddx4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
124393426
NCBI-ProteinID:
XP_046717213
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All DBs
Position
11:20110813..20120080
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AA seq
662 aa
AA seq
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MEDWEDDQSPVVTNTTFGNAENSWNNGNQQNSLKRITNDNKESSWKSAGDGFGSQDGDNV
WGSRKGSGDFKSFSSGVDENGNKEVDGGNSWNGGDCFRGRGSRGRGRGGFRNPFNSDSQS
DFVGRGGRGGRRGEGGRGTFPQERRRGGGGYRGQDEEVFSKGSQKEHEEKEEGETTGPKV
SYVPPPPPEEENSIFAHYETGINFEKYDDILVDVSGSNPPKAIMTFEEAQLCETLNRNVA
KSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPILQQLMNDGVATSKFSEVQ
EPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGFTIREVLKGCNVLCGTPG
RLLDIIGRGKVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSPGMPPKEERQTLMFSATY
PEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYSKREQLLELLKATGTERTM
VFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVATSVAARGL
DIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFDPESDTPLARALVKVLSGAK
QEVPSWLEEVAYSAHGTTGFSPHGKVFASTDTRRGGFFQKNSEPQPAAQSTSAGDDDDED
WE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaggactgggaagatgatcagagcccagttgtgaccaacacgacttttgggaatgct
gagaactcttggaacaatgggaaccaacaaaacagcttgaaaagaatcacaaatgacaat
aaggaaagttcttggaaaagtgccggtgatggttttggtagtcaagatggagacaatgtt
tggggttcaaggaaaggaagtggagactttaagagcttcagttcaggtgttgatgaaaat
ggaaataaagaagttgatggtggtaactcgtggaatggtggagactgtttcagaggaaga
ggaagcagaggaagaggacgaggagggtttagaaatcccttcaactctgattcccaaagt
gactttgttggcagaggtgggcgtgggggaagaagaggagaaggaggtcgtggcactttc
ccacaagagagaagacgtggaggtggaggttatagaggacaagacgaggaggtgttttcc
aaaggctcacagaaggagcatgaggaaaaagaagagggtgaaactacaggacctaaggtc
agctatgtaccccctccaccaccagaagaagagaactctatttttgctcactatgaaacg
ggcatcaactttgaaaaatacgatgacattctcgtggatgtaagcggaagcaacccgccc
aaagcgatcatgacctttgaagaagcgcagctctgtgagactcttaacagaaatgttgcc
aagtcaggatacgtgaagcctactcctgttcagaagcacggtattcctatcatttttgcc
ggaagggatcttatggcttgtgcccagactggatctggaaaaacggccgccttcctgctg
cctattctacagcagctcatgaacgatggcgtcgcaaccagcaagttcagcgaggtgcag
gagcctgaggtcatcatcgtcgctcccaccagggaactcatcagtcagatttaccttgaa
gcccgcaagtttgcttacggcacttgtgtgcgtcctgtggtggtttatggaggtacaagc
acaggatttaccatccgagaagtgttgaaaggttgtaacgtgttgtgtgggacccctgga
agattgcttgacattattggtcgtggaaaggttggactgagcaaagttcgttatttggtg
ctggatgaagcagaccgaatgttggacatgggctttgagcccactatgcgaaagctggtg
aactctcccggaatgcctcctaaagaagagcgccaaaccctcatgttcagtgccacgtat
cctgaagatattcaaaggctagcatctgatttcctgaaggtggattatcttttcctggca
gtgggagtggtgggtggagcctgcagtgacatagagcagaacatcatacaagtcactcgg
tactcgaagagggagcagctgctggagctgctaaaggccacagggacggagagaacaatg
gtctttgtggaaaccaagaggagtgctgatttcattgcaacatttctctgtcaggagaaa
gtacccactactagcattcatggagatcgggaacagcgtgagcgagagaaagccctcgga
gatttccgcacaggacagtgtcctgtcctggtagctacatcagtagctgccagagggctt
gacattgagcaggtacaaaatgttatcaactttgaccttccgaaatacatcgatgagtat
gtgcaccgtattgggagaacaggccgatgtggaaacacgggaagagccgtgtcatttttt
gacccggagtccgacacgcctcttgctcgagcgctggttaaagtcctttctggggccaag
caggaagttccttcgtggctagaggaagttgcatacagtgctcatggtaccacagggttt
agcccacatggaaaagtatttgcctccactgacactcgcaggggtggatttttccagaag
aactcggagccacagccagctgctcagagcacctctgcaggagatgatgatgatgaagac
tgggagtag
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