Silurus meridionalis (southern catfish): 124393489
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Entry
124393489 CDS
T08004
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124393489 (chd1)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124393489 (chd1)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124393489 (chd1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
124393489 (chd1)
SLIK complex
124393489 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
124393489
NCBI-ProteinID:
XP_046717323
LinkDB
All DBs
Position
11:complement(20397889..20414918)
Genome browser
AA seq
1818 aa
AA seq
DB search
MAGRSEDESVSNSTGDSSNSDDESGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQSD
SDSEKSKGKNGQNNSAKIDSSEFWKSNPSILAVQRSAMLRKQQQQQQQQQQQSSSNSDSD
DESSSSDDSDDDSSRKRKSKGTGSDSDSESGSGSGSGSGSDSFDSSAEEEGENSEESVSD
YEPSHKVKSRKPPNKTNARNGKKSKVMKKKASTSSSDEDDDYKKALAGPRRQATVNVSYK
EDEELKTDSDDLVEVCGEDVPPPEEDEFETLERVMCNRIGRKGATGASTTVYAVEADGDP
NANFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLENFKKKEQDKKKWL
KTASPEDVEYLNCQQELMDDLHSQYQLVERIISHSNQKSAAGYPDYLCKWQGLSYSECSW
EDGALIARKFQKFIDSYMSRNQSKTIPSRDCKVLKLRPRFVPMKKQPHYIGGEGLELRDY
QLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS
WQREIHLWAPLMNVVVYLGDISSRNMIRTHEWMHTQNKRLKFNILLTTYEILLKDKSFLG
NVSWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FHSWERFEEDHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQ
YYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNDFHNKAEALQHLI
RSSGKLVLLDKLLLRLKERGHRVLIFSQMVRMLDILAEYLKNRQFLFQRLDGSIKGEMRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
RQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVAN
FTMMEEEDMDVDADGNRKTWESIIPEEQRRRLEEEERQKELAEIYMLPRMRNCAKQISFN
GNEGRRSRNRRYSGSDSDSGSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAIARDAELVDKSEHDLRRLAETVHNGCMKTLRENPCGPEKASGGRRGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIDWGKDDDSSLL
IGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEA
QRQTGLANSRKRKPRGKKNKTVKPKVDEVVNSLSSAPPSEKSSEDEDEKEDEKDSTPAKP
PPNKRGRASDRVVKEEDEEEEDEEEEDDEEEEEEEEAEPEPHVKEPEEKEIKEREIKKDV
KKEKKEESRECKEKKEPKEKKESKPVEFRVEESFTEKTPEMKAEVREKNKKADVPVHITA
GGENVPVSEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIG
DHITDCLKEYTNLEHIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQTADQNT
STVNTQAFRHTDIERLKDSQHDESSRDSYSSDRHHSTSRSHEQSKERHSGDSYRKSADSR
KRPYSSFSNGKDHRDRDHYRERQDSRYYSESKHRKLDDHRSNRDNWSDSNNKERVHSEHR
SHSEHRSSSDYSHHKASRDYRYHSDWQSEQRASGSGPRSPRDQRSPYDPRSPMGHRSPFE
YSSEHKSTPEQVWTSRKT
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atggctggccgcagcgaagacgaaagtgtgagcaacagcaccggagattccagtaactcg
gatgatgagtctggatctggttcaggctctggttccagctccagcagcagcagctctagt
agtagccagtcaggaagcagcgactcaggaagtggttcagactcgggtagccagtccgat
tctgactctgagaagtccaaggggaagaatggtcaaaataactctgcaaagattgattca
tcagaattttggaagtctaatcccagtattctggcagtgcagaggtcagctatgctcagg
aaacagcagcagcagcagcagcaacaacaacaacagagctcctcaaacagtgattcagat
gatgaatcctccagcagtgatgactcagatgatgactcttcgaggaagcgaaagagtaaa
gggactggttccgactcggattctgagtctggctccggctccgggtctggttcagggagt
gactcgttcgattcttcagctgaggaagagggagagaacagtgaagagtcagtttcagac
tatgagcctagccacaaagttaaaagcaggaagccacctaacaagaccaatgccaggaat
ggaaaaaagagcaaggttatgaaaaagaaggcttcgacatcttcatcagatgaggatgat
gactataaaaaagccttggcaggtcctcggaggcaggccactgtgaacgtcagctataaa
gaggacgaagaactgaaaacggactctgacgacttggtggaggtgtgcggcgaggacgtc
ccaccccccgaggaggatgagtttgagaccctggaacgagtgatgtgcaatagaatagga
cgaaaaggagccaccggagcttccaccacagtctacgccgttgaggctgatggagaccct
aatgccaacttcaacccaaacaagcagccaggagatgtgcagtacttgatcaagtggaaa
ggctggtcacacattcacaacacctgggagacggaggagacgctgaagcagcagaacgtg
aagggcatgaagaaactggaaaacttcaaaaagaaggagcaggacaagaagaagtggctc
aaaactgcttcaccggaggacgtggaatacttaaactgccaacaggaactcatggatgac
cttcactcgcagtatcagctcgtagagagaattatcagtcattccaatcagaagtcagca
gcaggatacccagactacctatgcaaatggcaggggctttcatattcagaatgcagctgg
gaagacggggcacttattgctagaaagttccagaagttcatagactcctacatgagccgg
aaccagtcgaaaaccatcccctcgagggactgcaaggttttaaagctgaggccacggttc
gtgcctatgaagaaacagcctcattatatcggcggagaaggacttgagctccgagactac
cagctggacagcttaaactggatggcccattcgtggtgcaaagggaacagttgtattcta
gcagatgaaatgggccttggaaagaccattcagaccatctcctttctcaactatctgttc
catgagcaccagctttatggaccgttcctgttagtggtgcccttgtctacactcacctcc
tggcagagggaaatccatctctgggccccactgatgaatgtggtcgtctatttgggtgac
atcagcagtagaaacatgatcagaacacacgagtggatgcatacccagaacaagcggctc
aaatttaacattcttctcactacatatgaaatcctcctgaaagataagtcatttctgggc
aacgtgagctgggcctttattggtgtggatgaggcccacaggttgaagaacgacgattcc
cttctgtacaagaccatgattgacttcaagtccaaccaccggctccttataacaggaaca
cctctgcagaactccctcaaggaactgtggtcactcctccacttcatcatgccagagaag
tttcattcgtgggagcggtttgaagaagatcatggtaaaggcagggactcgggctacact
agcttgcacaaggagctggagcctttcctgctacgcagggtcaagaaggatgtggagaag
tcgctacctgccaaggtggaacagatccttcgggtggagatgagtgccatccagaaacaa
tactacaagtggatattgaccagaaactacaaggcactcagcaaaggcacaaaaggaagc
acgtctgggttcctaaacatcatgatggagctgaagaagtgctgtaatcactgctacctc
atcaagccgccggaggacaacgacttccacaacaaagcagaggctttgcagcacctcatt
cgcagtagtgggaaactggtactcctggataagctgctgttgcgactgaaagagcgcggc
caccgggttctcatcttctcccagatggtccggatgctggacatccttgcagaatacctg
aagaatcgccagtttttatttcagaggttggacggttccattaagggtgagatgaggaag
caggcattggatcatttcaatgcagagggttccgaggacttctgtttcctgttgtccaca
cgagcaggtggtttgggcattaacttggcttctgcagatactgtggtcatctttgactct
gactggaacccccagaatgacctgcaggctcaggccagagctcataggataggacagaag
agacaggtaaatatttatcgattggtgactaagggctctgtagaagaagacatcatcgag
cgagccaagaagaagatggtgctggaccacctcgttattcagaggatggacactacaggg
aaaacagtccttcataccggtgctgctccttccagcagttccacccctttcaacaaagag
gagctgtctgctattttaaagtttggtgccgaggaactttttaaggagccggagggagag
gaacaagagccccaggagatggatatcgatgaaattctgaagagagcagagacaagggaa
aacgatcctggtccatcaactgtaggggaagagcttctctcgcagttcaaggtggcaaac
ttcaccatgatggaggaggaagatatggatgtggatgcagatggcaacaggaaaacctgg
gaatcgatcatccctgaagagcagcggaggagactggaggaagaggaaaggcagaaggag
ctagcagagatctacatgctgcctcgcatgaggaactgtgccaaacagataagctttaac
ggtaatgagggcagacggagccggaaccgaagatattctggctccgacagtgactctggt
tcagaccgaaagaggcccaagaagcgtggcagaccgcgaactattcctagagagaacatc
aaaggttttagcgatgcagagatacgaaggtttattaagagttataagaaatttggaggc
cctttggaaagactggatgctattgcccgggatgctgagctggtcgataaatcagagcat
gacctgaggcgactagcggagacggttcacaacggctgtatgaaaaccttgagggagaat
ccatgtggaccagaaaaagcttcaggaggcaggcgagggaaggtgaaaggacctactttt
aggatctctggtgttcaagtcaatgctaaacttgtaatctcacatgaggaagaactggcc
cctttgcataaagccattcctgctgacccagaagaacggaagaggtatatgcttccttgc
catgcaaaggcagctcattttgacattgactggggcaaagatgatgattccagccttcta
attgggatttacgagtacggatatgggagctgggaaatgattaagatggacccagacctt
aatctcacccataagcttttacctgatgaccctgataagaagccacaggccaaacagctc
cagacgcgagccgactacctcatcaagttgctcagcaaggaccttgccaaaaaggaggcc
cagaggcaaacaggcttggctaattcccgaaagaggaagccacgtggaaagaagaacaaa
actgtgaaaccgaaagtggatgaagttgtcaatagtctgtcctctgctcctccctcggag
aagagctcagaagatgaggatgaaaaggaagatgagaaggactccacacctgccaagcca
ccgcccaacaaaagggggcgagcttctgatcgggttgtaaaagaggaggatgaggaggag
gaagatgaggaggaggaggatgatgaagaggaggaggaagaagaggaagcagagccagaa
ccccatgtcaaagaaccagaggagaaggagataaaagagagggagataaagaaagatgta
aaaaaggagaagaaagaagaaagtcgggaatgcaaagagaaaaaggaacccaaagagaaa
aaggagagcaagcctgtggagtttagagtagaggaatctttcacagagaagactccggag
atgaaagctgaagttcgggaaaaaaacaaaaaggcagatgtgcctgtgcacataactgct
ggaggagagaacgttccggtctctgaggaatccgaagagctcgaccagaagaccttcagt
gtgtgtaaggagcgcatgcggccagtgaaggcagccttaaaacagctggatcgtcccgag
aagggtctttccgagcgcgagcagctggagcacacacggcagtgcctaattaaaatcgga
gaccacatcacagactgtctaaaagagtacaccaaccttgaacacatcaagcagtggaga
agaaatctttggatattcgtttccaaatttacggagtttgatgctagaaagctgcataaa
ctgtataagcatgcaattaagaaaagacaagaaaacgctcagacggcggaccaaaacact
agcactgtaaatacacaagccttcagacacacagacattgagaggttaaaagactctcag
cacgacgagagcagcagagacagctacagttcagaccgccaccactcgacctcacgtagc
cacgagcagagcaaagagcgccactccggcgactcctacaggaaaagcgctgactccagg
aagagaccgtactcttccttcagcaacggcaaagaccacagagacagagaccactacaga
gagcgccaggacagcaggtactacagcgagagcaagcataggaagttagacgatcaccga
tcaaaccgagacaactggtcagacagcaacaacaaggagcgcgtgcactcggagcaccgg
tcgcactcggagcaccgctccagctcggactacagccaccacaaggcatctcgtgactat
cgttatcactccgactggcagtcggagcaacgcgcttcaggtagcggccctcgttctcca
cgagatcagagatcgccctacgacccccgatcgcccatgggccaccggtcgcctttcgag
tactcttccgagcacaagagcacgcccgagcaggtctggaccagtcgtaagacatag
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integrated database retrieval system
