Silurus meridionalis (southern catfish): 124393690
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Entry
124393690 CDS
T08004
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124393690
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124393690
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GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124393690
NCBI-ProteinID:
XP_046717621
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Position
11:complement(15612739..15655567)
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AA seq
889 aa
AA seq
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MGVLSSMKGGGGGKEVPVEGEVSSKQRPKRKCLQRHPLLSKKKALDFSEEEEEDEDEELE
KVPVESPEHSREVPECVAMEDDCDDDSSEQRARRPMNAFLLFCKRHRSLVRQKHPRLDNR
GATKILADWWAVLEPSEKQKYTDMAKEYKDAFMKANPGYKWCPATSKPVKSPTHAVGNVR
KKAWSLPPSNAKDITAAKKVPKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTAREISN
SSQSGVADVAKHTGKSAFFQPTETSSCPARLVEGCETSECRSAAAPQTEVCGLSQPNSPD
LPSSCMRCPLFQLAEISSSGSQASVSEIKQCGQSALFQLAEMCLASEAEKMEALSSQPAM
DSSSLCAQDSAPNITPTTDIPSPTPPSSSPTSCKKKKKKPSDLAKGEKSPGSPKKPCKKR
SSSNSDLESLLYTIEAVAKGAWGSQEKETTRKRPRTSSGAADQPSTADKKKTKPKAKKQL
RTKEEEEEKVEEEDCKQLETECSVLSDEAEVNPECKKEADVKVDRVEDSEPHVSTAQQNT
CVEADPPLPNKEEERDLEIKPVVFQTEEKDIEPKPEACGSRKSERSCKGALYKTLVSEGM
LTSLRANVDRGKRGSMRGAVSESEIGWTDESCNFTQVAASNPKKLKKSKSKEEPAPGNLG
KLEEEFEKKFNSLPQYSPLTFDKKSTAVIKRKKANGANPLENPAPNKGPSPSQKKTLFHK
IVSKYKHKKEKAGTLDKAIAQPESTASDTGTVKSDSPGVVSLSTETRKMGDVPVGSQKRK
ARKSKITHLVRTADGRLSPAEADKVKDLTQDQDGKPLTHETLCNTESCSTDHGPDESGSL
PAFFSLAALAEVAAMENVHRGQRAVSMAAEGQVKDMAPQTPMLISCADQ
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcctcagcagcatgaagggcggaggaggggggaaggaggtgccggtggagggc
gaggtgagcagcaagcagcgccccaaacgcaagtgccttcagaggcaccccctgctttcc
aagaagaaagccctggacttctctgaggaagaggaagaggatgaggatgaagagctggag
aaggttccagtggaaagccctgagcacagccgtgaggttcctgagtgtgtggcgatggag
gatgactgtgacgatgactcttcggagcagcgcgctcgccggcccatgaacgccttcctg
ctcttttgtaagcggcaccgctcgctggtgcgccagaaacacccgagactggacaaccgt
ggagccaccaagatcctggcggactggtgggccgtgctggagcccagtgagaagcagaaa
tacaccgacatggccaaggagtacaaagatgcctttatgaaagcaaacccaggctataag
tggtgtcctgccaccagcaaaccggtgaagagtcctactcatgcagtgggtaatgtgcgt
aagaaggcctggtctctgccccccagcaacgccaaggacatcactgctgccaaaaaagtg
cccaaaactgacagcacaccacagctaaactttgccatggcagatccgactaagatgggt
ggcctgagcatgctgctgctagctggggagcatgcgctgactgccagagagatctctaat
agttcacagagcggagttgcagatgttgcaaagcatactgggaaatctgcctttttccag
ccgactgagacttcctcgtgtccagctcggcttgttgaagggtgtgaaacttcagagtgc
cgaagtgcagcggctcctcagaccgaggtatgtggcctttctcagcccaactcgccagat
ttacccagcagctgcatgcgctgtcctctcttccagctggctgagatatcatccagcggt
tctcaggcgtcggtatctgagatcaagcagtgtggccagtctgctctttttcaacttgcc
gagatgtgtttagcctctgaagcagagaaaatggaggccctttcctcccaaccagccatg
gactcgtcctctctctgtgcgcaggacagtgctcccaacataacccccaccacggacatt
ccctcaccaacaccaccgtcatcctccccaacgtcctgtaagaagaagaagaagaaacca
agcgatctggcaaaaggcgagaagagccctggctcgcccaagaaaccctgcaagaagcgt
tcttcgtctaactcggacctcgagagcttgttgtacaccattgaggcggtggccaaagga
gcctggggctcacaggagaaggagacaaccaggaagcggccacgtacttcaagtggtgcc
gcggatcagccttcaacagcagataagaaaaagaccaaacccaaagcaaagaaacagctc
aggaccaaggaggaagaagaggagaaggtagaagaagaggactgcaagcaactcgagacg
gaatgctctgttctgagcgatgaagcagaggtgaatccggagtgcaaaaaggaagctgat
gttaaagtggacagagtggaggattcagagccacacgtctctacagcacaacaaaacaca
tgtgtagaagcggaccctccactgccaaacaaagaagaagagagggacctggaaattaaa
ccagttgtatttcaaacagaagagaaggacatcgagcccaaacctgaagcctgcggatct
cggaaatcagagcgaagctgtaagggagcactgtacaagaccctggtgtctgaaggaatg
ctgacatcactgagggccaacgtggacagaggaaagagaggctccatgcgtggcgctgtg
tccgagtctgagataggatggacagatgaaagctgtaatttcactcaggttgctgccagc
aaccccaaaaaactgaaaaagtccaaatccaaagaagagccagcaccaggcaacctaggg
aagctggaggaggagttcgagaagaagtttaacagcctcccccagtacagtccactgacg
ttcgacaaaaagagcacagcggtcatcaaaaggaagaaagccaacggagccaaccctctg
gaaaatcctgcgcctaacaagggtccatccccatctcagaaaaagactttattccacaag
attgttagcaagtacaagcacaaaaaggaaaaggctggaactttggacaaagccatagca
cagcccgaatcaacagccagtgacaccggcacggtgaagtccgactccccgggcgtcgtt
tctctttccactgagacccgtaagatgggcgatgtgcctgtgggtagccagaaaagaaaa
gccagaaaaagcaaaatcacccacttggtgcgcacagccgacgggcgactgtcgcctgct
gaggcggacaaagtgaaggatctgacccaggatcaggatggaaagccattaactcatgag
actttatgcaacactgagagctgctccactgaccacggaccagatgagtctggcagcctg
ccggccttcttcagcctagcggccctcgccgaggtcgccgccatggagaacgtgcatcga
gggcagcgagcagtgagcatggctgctgaaggtcaggtgaaggacatggcacctcagact
cccatgctgatctcttgtgctgatcagtga
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