Silurus meridionalis (southern catfish): 124393715
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Entry
124393715 CDS
T08004
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
124393715 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124393715 (depdc5)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
124393715 (depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
124393715
NCBI-ProteinID:
XP_046717666
LinkDB
All DBs
Position
11:complement(2898919..2927057)
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AA seq
1600 aa
AA seq
DB search
MFVVPRVSTADKMTVTTKTKTYKLVVHKKGFGGSDDELMMNPKVFPQVKLGDIVEIAHPN
DEYSPLLLQVKSLKEDLQKETISVDQTVAQAFKLRAYQDVIINIVDPKDVTLDLVELTFK
DQYIGRGDMWRLKKSLVSTYAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFR
SSSAMVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLSDLFTKWKEKNCSHEVTVVLFSRTF
YAAKTQDEFPESQRGAIRQDHEGRFYEDFYRVVAQNERRDEWTSLLVTIKKLFIQYPVLV
RLKGADRFPCGQNSTAAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEV
DRLLMILTKQRMIDNGIGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLDDYNLPHWINHS
FYTSKSQGSCSSFTPRIKLAGQKLHVEKLKSSKEHSIGAPKDSENSLPIQVDYDAHDAQV
FRLPGPARAQRGSTFRSNREREASFRKSWCSEVGGGHYSGCSPPSRPIGGTDEQRSLASD
DSLGRVSNILLIPRHPPQYEVSSSLGYTSCARGLLEKLVESQRDSSAPGRFTVGSAESTL
HIRPGGYTPQRALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQ
GSEQRDPVHTSAELLELAYHEAMGRRTGLPQTADSGLYISGGTDDYSGSPASSNSTGTPV
NRGSFDECSSTSDPTLQLSAPPTVPAFCCTVGVDWKSLTTPACLPLTTDYFPERQSLQND
YTEGYYDLLPHTDLERRDDEVPVMSAPRVFEEFICQRLMQGYQIIVQPNSRKAPPTIAPP
LSSSPLYSRGLVSRRKAEEEESVYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESTQIQY
SYSLCPPHADGHFVPCWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLL
LPAGGARRVADGEGHWDVYGEGPGAAAGCGDWALLDGFIRFLEGLNRIRRRHRSDRIIRK
GAAMKGLQVTSPLSPYTPEPLAPPLGKKGASALTTLLELDQTHKTLEEQQAVAQYAVVKT
NPSFTDAAPVISVANTYIDSPRKQDAAFMLDFIRSPRSSYLSHPQMPPEPPAVNPADSGS
IEKGGNLSNDRLAVGGASDTASGPDPGAQMGNLSSSSTMLEILEAIKHPNTGVQLLPEQK
GLPPNCFISAEVVHWLMNTVENVATQGIAVEIMQKMLDEGLIAHASGEAMRTFVYGFYFY
RIVDKEAEKPPCSVAISAAALDDFQRKWFEVALVLEERRPCDLPTFLLPWLPSRPASYAS
RHSSFSRSFGGRSQAAALLAATVPEQKTVTLDVDVNNRSDRTEWGSCYYHGNFSPNMAFE
IKLHWMAVTAAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQLFIPLNI
QCLLKDSNDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFSFPAENKPQYIHV
TGTVFMQLPFSKRKYCSGQQRRRRNSASSASQSLFGPEEHVGYHWAYNTMLTKAWRTGVL
GDEKLAERLLRDFTDFCANKDKRLVSFWENCVEKMNSSAP
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttgtgcctcgtgtgagcactgcagataaaatgacggtcaccaccaaaaccaaa
acctacaaactggtagtccataagaagggatttggaggaagcgatgatgagctgatgatg
aacccgaaggtgtttcctcaggtcaagctgggagacatcgttgagatcgcacaccccaat
gatgagtacagcccgctcctgctccaggtgaaaagcctgaaagaagacctgcagaaagag
acgatcagtgtggaccagaccgtcgctcaagccttcaagcttcgcgcctatcaggatgtc
atcattaacattgtggatcccaaggacgtgacactggatctagttgagctcacctttaaa
gaccagtacattggcagaggagacatgtggagactaaagaagagtctggtcagcacgtat
gcgtatgtaacccaaaaggtggagttcgcagggatcagggctcaggcgagtgagctgtgg
gtaaaaggcgagaaggtcacttgtggttacatcagtgaggacacgcgggtggtgtttcgc
tccagctcagccatggtgtacatctttatccagatgagctgcgagatgtgggactttgat
atctacggcgatctctattttgagaaggcggtcaatggcttcctctcggacctgttcacc
aagtggaaagaaaagaactgcagccatgaggtcacggtggtgttgttctcccgaaccttc
tacgccgccaagacgcaagatgagtttcccgagagccagagaggagccatcaggcaggat
catgagggccggttctacgaggatttctacagagtggtggctcagaacgagaggagggac
gagtggacgtctctgctggtcaccattaagaagctgtttattcaatatccagtgcttgtg
cgccttaaaggagcagacaggtttccgtgtggacagaactccactgccgctcagggaaat
tacctcgaagccatcaacctgtcgtttaacgtgttcgataaacactacatcaaccggaac
tttgaccgcacggggcagatgtcggtggtgatcacgccgggagtgggcgtgttcgaggtg
gaccggctcctcatgatcctcaccaaacagcgcatgatcgacaacggcattggagtggac
ctggtgtgtatgggagagcagccgctacatgccgtcccgctcttcaagctacacaaccga
acagtaccgggggactccagactggatgactacaatctgcctcactggatcaatcacagc
ttctacacatcaaagagtcaaggctcatgcagctcgttcactcccaggattaaactcgct
ggtcagaagctccatgtcgagaaattaaagagcagcaaagaacactctattggtgctcct
aaagactcggagaacagtcttcccatccaagtggactacgatgctcacgatgctcaggtc
ttcagacttcctggacctgcgagagcacagaggggcagcaccttccggtcaaacagagag
agggaggcaagctttaggaagagctggtgttcggaagtgggtggaggacactacagtggc
tgctctcctccttcccgtcctatagggggcacagacgagcagcgcagccttgcgtccgac
gacagtctgggccgcgtctcgaacatcctgctgatccctcgccatccgccgcagtatgaa
gtcagcagttcgcttgggtacaccagctgtgccagagggctgctggagaagcttgtggag
tctcagcgggactcgagcgctccgggacgcttcactgtgggcagtgccgagtcgacccta
cacatccgcccgggcggttacacgccccagagagctctcatcaatccattcgccccttca
cgcatgcccatgaagctcacctccaaccgccgcagatggatgcacaccttccctgtgggt
ccttctggagaagccatccagatccaccatcagacaaggcagaacatggccgaactgcag
ggtagcgagcagcgtgaccccgtccacacctcagcagagctgctggaactggcctatcat
gaagcaatgggcaggcgaacaggacttcctcagactgcagacagtgggctctacatcagt
gggggaactgatgattattcaggaagcccagccagcagtaatagtacaggtactcctgtc
aatcgcggctctttcgatgagtgctccagcacttcggatccaaccctacagctctctgcc
cctcctacagtgcctgcgttctgctgtacagttggagtggactggaagtctctgaccacg
ccggcgtgtctccccctcaccaccgactattttccagagcgccagtcgctccagaacgac
tacacagagggctactatgacctgctgccacacactgacctggagcggcgtgatgacgag
gtgccggtgatgagcgccccacgtgtgtttgaagagtttatctgccagaggctgatgcaa
ggctaccagatcatcgtccagcccaacagcagaaaagctccgcccacaatcgctccaccc
ctcagcagcagcccgctctattccaggggactggtgtctcggaggaaggctgaggaagag
gagagcgtgtactggctcagcatgggacgaactttccacaaagtctgtctgaaggacaaa
atcattactgttacacgatacctgcccaaatacccgtatgagtccacccagatccagtac
agctacagtctgtgcccccctcatgccgacggtcattttgtgccctgctgggtggagttc
agccacgagagactggaggagtacaaatggaactacctggaccagtacatctgctcagct
ggctccgaggacttcagccttatcgactcgctgaagttctggcgcacccgctttctgttg
ctcccagcgggcggggccaggcgagtggcagacggcgagggccactgggacgtgtacggg
gaagggccaggggcagcggctgggtgcggagactgggcactgctggatggatttatacgc
tttttagaggggctgaacagaatccggagacggcatcgatctgatcgtatcatccggaaa
ggagcagccatgaagggtctacaggtgacatcaccgctctctccttacaccccggagcct
ctggcacctcctctgggtaaaaaaggtgcttcagctctcaccacgttgcttgagctggat
cagacgcacaagactctggaggagcagcaggctgttgctcagtatgcggtggttaaaaca
aacccgtcattcactgatgctgctcctgtcatttctgtggcaaatacttacatcgacagc
cctagaaagcaggacgctgcgttcatgttggattttattcgtagccctcgctcctcctac
ctgtctcacccacagatgcctcctgagcctcctgcagtcaatcctgctgattccggttca
atagagaaaggaggaaacctatcaaatgacaggctggcagtgggcggagcttcagacact
gcgtcaggacccgatccaggggctcagatgggcaatctgtcctcctcctccaccatgctg
gaaattctggaggccatcaaacacccaaatactggcgtccagctgctgcctgagcagaag
ggtttgcccccgaactgcttcatcagtgctgaggtggtacactggctaatgaacacagtg
gagaatgtggccacacagggcatcgctgtggagatcatgcagaaaatgttagatgaaggt
ctgatcgctcacgcgtccggcgaggccatgcgcactttcgtctacggattctacttctac
aggattgtggacaaggaggcagagaagcctccgtgcagcgttgcgatctctgccgcggct
ctcgacgatttccagaggaagtggtttgaggtggcgttggtgctcgaggagcgtcgccca
tgtgaccttcccaccttcctgttgccttggctgcccagtcgacccgcttcctacgccagc
agacacagttctttcagccgcagcttcgggggccgcagccaagccgccgcacttctagct
gctacagtacctgagcagaagacagtcactctggacgtggacgtgaacaaccgcagcgat
cgtactgaatggggtagctgttattaccacggcaacttctctcccaacatggcattcgag
atcaagctgcactggatggccgtgactgcggcggtgcttttcgagatggtccaaggctgg
cacaggaaggcggcatcatgcggtttcctgttggtcccggtgctggaggtgccgttcgca
ttgccctcgtatctgtacggagatccgctacgtgctcagctcttcatccctctcaacatt
cagtgtctgctcaaagactccaacgacaacctgttcgagggattcgaaccggagacgtac
tgggaccggatgcagctcttccaagaggctattctttacaggttcggttttgttcaggac
aaattctctgcttcggctttcagcttccctgccgaaaacaagccgcagtacatccacgtc
acaggcaccgtgttcatgcagttgccgttctcaaaaaggaagtactgtagcggtcagcag
cggcgccgccgtaactccgcctcctcggccagtcagagcctcttcgggcctgaagagcac
gtcggctaccactgggcctataacaccatgctgaccaaagcgtggcgcaccggcgtccta
ggagacgagaagctcgccgagcgtctcctccgagacttcaccgacttctgcgccaacaag
gacaaacggctcgtgagcttctgggagaattgtgtggagaaaatgaactcgagtgcccct
tga
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