Silurus meridionalis (southern catfish): 124393907
Help
Entry
124393907 CDS
T08004
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124393907 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124393907 (mtrex)
03041 Spliceosome [BR:
smeo03041
]
124393907 (mtrex)
03009 Ribosome biogenesis [BR:
smeo03009
]
124393907 (mtrex)
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124393907 (mtrex)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124393907 (mtrex)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124393907 (mtrex)
Spliceosome [BR:
smeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124393907 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
124393907 (mtrex)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
Pre-60S particles
Helicases
124393907 (mtrex)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124393907 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
124393907
NCBI-ProteinID:
XP_046717916
LinkDB
All DBs
Position
11:complement(3723325..3755156)
Genome browser
AA seq
1038 aa
AA seq
DB search
MADSFGDDLFSVFDDEQTTATKKPSSKAETRSAKTAETHSREKTESSSGAKTKREAENDG
ADEVSFGKKAKLDSMLSEEINLADLMPKVKVEQVETVEGCTHEVALPADQEYTQLKSRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDSGDPGASGGGGKWDPKGR
RGGTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVDEVF
SNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEK
MQKLEEMYNSIEIPNEDSVVTYYKIRQQLAKLAKEIEEYVHKPKYCLPFLQPGRLVKVKK
DELDFGWGVVVNFSKKANVKASTGDLDPLYVVEVLLHCSKESVKNAATEAAKPAAQSEKG
EMQVVPVMLNLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPMLDPIDDMG
IKDSGLKKVIQKVEAFEHRMYTHALHSDPSLSTVYTLCEKKAVIAGDIKAAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQ
ATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDAYLNQFRP
HLMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
LGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcctttggtgatgatttattcagcgtgttcgacgacgagcaaacaactgca
actaaaaaacccagttctaaagccgagactcggagcgcgaaaacagctgaaacccacagc
agagaaaagaccgaatcctcgtccggggcaaaaacgaaacgagaggcagaaaacgatggc
gctgacgaggtctcattcgggaaaaaggccaaactggactcgatgttatcagaggagatc
aatcttgcagacttgatgcctaaagtgaaagtggagcaggttgagacagtggaaggctgc
acacatgaggtggcgctgccggctgatcaggaatacacccaactgaaatcacgagtggga
aaagcagccaaggaatacccgtttattcttgacccgtttcagcgcgaggccattctgtgc
attgacaacaaccagtctgtcctcgtctcggcccacacctccgccgggaaaaccgtgtgc
gcagagtacgccattgctctggctctgagggagaagcagcgagtgattttcaccagcccc
attaaagctctgagtaatcagaaatacagagaaatgtacgaagagttccaggatgtggga
ctgatgactggagacgtgactattaaccccactgcctcctgcctcgtcatgactactgag
attctgaggagcatgttgtaccgggggtcagaggtcatgcgtgaggtggcctgggtcata
tttgacgagatccattacatgagagattcagaacgtggtgtggtctgggaggagaccatc
atcctccttcccgataacgtgcattacgtctttctgtcggctaccatccccaacgcacgc
cagttcgccgagtggatctgtcaccttcacacacagccatgccacgtggtgtacacggac
tacagacccactccgctgcaacattacatcttcccagcaggaggcgacggacttcacctg
gtcgtggatgagaacggcgagttcagggaggacaacttcaatacggccatgcaggttctc
cgtgattctggagaccctggagcgagtggtggaggagggaaatgggaccctaaaggaaga
agaggaggaaccaggggtccttccaacgtttttaagatcgtgaagatgatcatggagagg
aatttccaacccgtcatcatcttcagcttcagcaagaaggagtgtgaggcatacgctctg
caggtgtccaaactagacttcaatacagatgaagagaagaaactggtggatgaggtcttc
agcaatgccattgactgtttgtcagacgaggataaaaagttgccacaggtggagcatgtt
ctgcctctgttgaagagaggaatcgggatccatcatggcggactgctgcccattctgaag
gaaaccattgagattctcttttctgagggacttctgaaggctttgtttgcaacggagaca
tttgccatggggatcaacatgcctgctcgcaccgtactcttcaccagcgcacgcaagttc
gacggcaaagacttccgctggatcagctccggagagtacatccagatgtctggccgagcc
gggaggagagggatggacgagagggggatcgtcatctttatggttgatgagaagatgagt
ccagctgtggggaagcagctgttaaagggttctgctgaccctctgaacagcgccttccat
ctcacctataacatggtcctgaacttgctacgtgtggaggagatcaaccctgagtacatg
ctcgagaagtccttctaccagttccaacattacagagctgtccctggtgtagtggagaag
atgcagaagctggaggagatgtacaacagcatcgaaattcccaacgaagacagtgtggtc
acttactataaaatccgacagcagttagccaaactggccaaagagatcgaagaatatgtg
cataaacccaaatactgcctgccttttctgcagcctggccgcctggtcaaggtgaaaaag
gacgagttggatttcggctggggcgtcgtcgttaacttctcaaagaaagcaaatgtcaag
gccagtactggtgatctggatcccctgtatgtagtggaagttttactacactgcagtaag
gaaagtgtaaaaaatgctgcaacagaagctgcgaaaccagcagcacagagtgagaaagga
gagatgcaggtggtgccagtcatgctgaatctcctcacctccatcagctctgtgcggctc
tacatccccaaagacctgcggccctacgacaaccgacagagcatgcttaaatccatacag
gaggtacagaagcgtttccccgacggtcttcccatgttagacccaattgacgatatggga
attaaagattcagggctgaagaaagtcatccaaaaggtggaggccttcgagcacaggatg
tacacacacgcactccacagcgaccccagcctcagcacggtctacacactctgcgagaag
aaagcagtgattgcaggtgacatcaaagcagcgaagcgggagctgaagaaagcgcgcacc
gtgctgcagatggacgagctgaaatgtcggaagcgcgtcctgaggcgtctcgggttcgcc
acgtcctctgatgtcatcgaggtgaaagggcgggtcgcctgcgagatcagcagtgcagac
gagctgctcctgaccgagatggtgtttaacggcctttttaacgatctgactgcggaacag
gccacggctttactgagctgcttcgtcttccaggaaaatgctaacgagatgccgaaactt
acagagcagttagcaggccctcttcgacagatgcaggaatgtgccaagcgcatcgctaaa
gtctcagccgaggcgaagctggacgtggacgaggacgcctacctgaaccagttccgtcct
cacctcatggacgtagtgtacacttgggccaatggagcctcgttctcccagatttgcaaa
atgacggacgtttttgaaggcagcattattcgctgtatgagacgcctggaggagcttctg
aggcagatgtgccaagcagcaaaggccatcgggaacacggagctggagaacaagttcgct
cttggcatcacgaagatcaagcgtgacattgtgtttgctgccagtctttacctgtga
DBGET
integrated database retrieval system
