Silurus meridionalis (southern catfish): 124393968
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Entry
124393968 CDS
T08004
Symbol
frem2a
Name
(RefSeq) FRAS1-related extracellular matrix protein 2a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124393968 (frem2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
smeo04091
]
124393968 (frem2a)
Lectins [BR:
smeo04091
]
C-Type lectins
Lecticans
124393968 (frem2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
124393968
NCBI-ProteinID:
XP_046718011
LinkDB
All DBs
Position
11:complement(14334929..14399823)
Genome browser
AA seq
3117 aa
AA seq
DB search
MKEAYSFVSESIKRIMELCIGLVFLSLVAGCYGRHAGAHGLSYAHKTELSEDSILVANNR
IRVPFGRSVFIDPINDLVIEVQPGDKCSLIVLDNDPLTQRPGHLSPKKFPCEFGPNDVKY
SHLGSRSPNADRVRLQLRYDTQTETVIIPFMLEIEVLFTQLEIVTKNMPLTVDKLHGISN
SIDRRILEFTYDRNSEQCEVTSLAASSSLPRYGELSDKLEKTIDCDAFLRADIRYKHTSI
QKSPNRDYIPMVVELRNKENNLLKQEFFHIMTRIREGVQNSPPKPSFLAMMMMEIDQFVM
TALTSDMLAAEDTESDPDDLIFNITTPFSFEEGYIVSTDDRNLPITSFYQRDIKDLKIAY
KPPSMDSDTERIIQIEFEVLDTDGGVSEPFAFMIVIKPMNTLAPVVTKNAGQLLYEGQSR
HLFTQNNLEISDEDNLDSVRITVVNGLRHGDLTILGSSMKYFTPADLQVGIVVYQHDGSD
TYSDNIIFRMTDGKNEVEFLFPITIVPTDDEPPIINANTGLVVFKNQMIPISPLMLSAAD
IDSEDSTIKFTIDPPLSTIGDVLLRQSEAPEDPSSWKFNMEDGLYEKAVREWLQKDITDG
KLFYRHTGPHITEAVTDQFIFKAQDDADPPNQSDENTFFIRILPIDDVPPELFPGTSLQI
TVHEYQVTSLNKTVLRYTDLDSDDRDLKYTITQPPTDTDENHPVRFGSVVLTEQPHTEVS
EFTQAQVNHHKISYSPPDIELGITAHVSQFHFIVEDTAGNSVKGIFTILVQPVNNKPPEI
TNTGFTVFERGMHMITNAELDTTDLDTDRKQISFTLIQSPQHGQVQLSFADLIKDSTFSL
ADISEGRISYVHNGDETTNDAFKLDVSDGVHVVPITVKIIVKPIDDEMPTLTLPAGTLGS
HVSVLENGATEITVSVIQGKDEDTDDLRLTFIVEDAPAYGEILVNGLPSNMFTQADIING
LVRYTHTGGEIGFSSKEDMFNLTLTDMSDEWAVGGNTITGVSVHVTILPVDNKAPVVTVV
PTFNVTEGNKNIIGGHQIIVKDADTLTEDILCTIIVQPNSGYMENISPAPGSEKSRSGTA
ISAFSITDIIDGHICYVQSMHKRVEPVEDRFTFSCSDGVNFSERQIFPIVIIPTNDEKPE
IFMREFVVMEGMNVIIDTPILTGVDADIPVEDLTFIITKPPKHGFILDQLITGSLPVTNF
TVEQIREASSIIYEHDDSESTEDQFNVILTDGKHNVEGTVMIMIIAVDDETPRLAINDGL
EVEIGETKEINNKILKATDLDSEDSTLTFIIRYGPGQGILQRKTEHGFFENITVGMNFTQ
MELDNGYVLYTHNGQEGIRDIIKFDVTDGHNPLIDRYFYISVSNIDRVFPEVISKGVSLK
EGGSVMLTTDLLSTSDLNSPDENLVFTITRAPVRGHLESTDTPGMPIVSFTQLQLAGSKI
YYIHSSDDEIKMDSFEFEVTDGYNPVFRTFRVSIVDVDNKKPVLTVHELLVSEGHSKLIT
PFELTVEDQDTAEEFLKFTITQLPIHGKLLFNNSHPVTTFTKHDLNENLISYKHDGTEST
QDSFSFTVTDGTHTDFYVFPDTVFETRRPQVMKITISSIDNGVPQIVVNKGVQTLKVLPM
SHLGYPITSKVLKAEDRDSIPDTLVFYITTQPEHGYLINLQKGNDSIITFTQADIDDLKI
CYVLKDNNNATSDTFIFYVEDNGRNKLKEQHFRLDWSWISLQKQHYVVDEQAGVLEVVLR
RRGYLGETSFVAIGTLDGSAEKDKDFRGKFQKQVQFNPGQSTATWRIKILPDERYEQSET
FNIILSEPVMGALESPAVATVEIMDPEDESTVFIPQATLVVEEDIGELLVPIHRRGDLSE
ELMVLCYTLQGSATGTVPSTVLSFSDYISRLEGQSSILRFEKEETEKNCRVVIIDDSLYE
PEESFNVSLSVVLGGRLGSKYPSTRINILPDLDDAPVFYFGDSEYNVDESQGHIDVRVWR
TGTDLSKAATVTVKSRKTDPVSAEAGVDYVGISKNLDFGPGVNMQTIRVTILDDLGQPLL
EGIEKFELVLRLPINAILGEPAKATILINDTISDLPKMQFKHLLLNGEESDRRLTAVVQR
SGDISHQSTVRCYTRQGSAQVTIDFEERPNTNASVITFLPGDTEKPCVLTLVDDSVYEDE
EEMRLVLGSATSGSPYGASIGTKNETLVKLKDSADKPIIKFTETKLSVNEPKESGKISIV
RIPVHRVGDSSKVSVVRVHTKDGSAVSGEDYHPISKDVEFKEGETEHFVEVEVLFDGARE
MRESFTVHLKPDENMVAEIQMSKAIVYIEETNSMADVTFPSLPHVVSLLHYDDVRRTMYN
AHPPAGYPVVCVTACNPKYPEYEKTGSICASEHINDTLTHYRWLISAPTGPDGVTSPMRE
VDIDTFFTSSKIITLDSIYFQAGSRVQCAARAVNSNGDEGLELSSPIVSISMEEGMCHPR
KVGTVGAEPFSAKLHYTGTEDPEHANLIKLSVTMPHTDGMLPVLSTRALSNFELTLSPDG
SRVGNHRCSNLLDFDEVPTRHGFLTKATKTVEQVGESAPYQYNSTMRGLNTLRFYRNLNL
EACLWEFVSYYDMSELFTDCGGSIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGTSGWQ
HFDLQSELRLTFVYDTAILWKDGVGSPPQAELQGALYPASMRINEMGCLVVNFRTKAHFR
GLFVASHQASSLTSLVISTAHPGLTFNLSLVRTEPTYTQPMQQWRFTSDFAVRDYSGTYT
VKLIPCTTVLNMEYSVPAVCDPREPVTFDLDIRFQQVSDPVAVEFNLNTQMFLLSKRSVW
LSDGSMGFGQESDAAFSQGDIIYGRVMVDPVQNLGDSFHCNIEKVYLCTGADGYVPKYNP
TKFEFGCLADSPSLLYRFKIIDKAQPETQALSFGDMKFNAVLAVDDPSALSLVKQPSSDG
FRLDSSPLFQVAAGREWYIHTIYTVRSRDNANRGIGKRSAEYHSFAAHNTRARRSNQDMP
AIAEMISAEHNRGTNIMHIILEHQQAVQDGEVPAEGLVQHEMAKSGTGDEAVMVGGVSVG
LLLFGLIIAVLLLMLRSQRRPVKDVRKKSGKDGLTVSGSKQPVILRSGFEGSDGSEV
NT seq
9354 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggcttattcattcgtttctgaatcaatcaagcgcatcatggaactctgtata
gggcttgttttcttgtccttggtggcaggttgttatggacgccacgccggcgcgcacgga
ctgtcttacgcgcacaaaacggagctctccgaggactcgatccttgtagcgaacaacagg
atacgcgttcccttcgggagatcggttttcattgatcctatcaacgatttggtgattgaa
gtacagccgggagacaagtgcagcttaatagtcttggataatgatccgctgacccaaaga
cctggacatctttcacccaaaaagttcccatgtgaattcggacccaatgatgtgaaatac
tcgcatttgggctccaggagccccaacgcggacagagtgaggctgcagctcaggtacgac
actcagactgaaacggtcatcatcccgttcatgctggagatagaggtccttttcacccag
ttggagatagttactaaaaatatgcctctcactgtagataaactccatggcattagcaat
tcaattgacagaagaatcctggaatttacatatgatagaaactctgagcaatgtgaggtc
acatcactggctgcaagcagttcactccctagatatggtgaacttagtgataaattggag
aaaacgatagactgtgatgcttttctccgagcagatattcgctacaagcacacttctata
caaaagtctccaaaccgggattatattccgatggtcgtggaactgaggaacaaagaaaat
aatctactgaagcaagaattctttcatatcatgacccgcataagagaaggtgtgcaaaac
agtcctcccaaacccagctttctagccatgatgatgatggagattgaccagtttgttatg
actgctttaacttctgacatgttggctgcagaggacactgaatccgatccagatgatctt
attttcaacatcaccacccccttctcgttcgaggagggttacattgtgagtacagatgat
agaaatttaccaataacatctttttatcagcgagatataaaagacctgaagattgcatac
aagcccccaagtatggattcagatactgagagaataattcagattgaatttgaagttttg
gacacagatggtggagtttccgagccatttgcttttatgatcgttataaagccaatgaac
acactagcaccagtggtgactaaaaatgcagggcagcttctctatgagggtcagtccaga
catttgttcactcagaacaatttagaaatcagcgatgaagacaacctggatagtgtacgg
ataactgttgtaaatggtctccgtcatggtgatctcaccattcttggctccagcatgaaa
tatttcacacccgctgatttgcaagttggtattgttgtctaccaacatgatggcagtgac
acatacagcgataacatcattttcagaatgacagatggcaagaatgaagtggagtttttg
ttccctattacgattgttccgactgacgatgagccccccattataaatgctaacacagga
ctggtggtatttaaaaaccaaatgattcccatttcacccctaatgcttagtgcagctgat
attgactctgaagattccaccattaagttcactatcgatcctccactctcaactattggt
gatgtgctgctaaggcagtctgaggctccagaagatccatcctcatggaaattcaacatg
gaagatgggctttatgagaaagctgtgagagaatggttacaaaaagacattacagatggg
aaacttttttacaggcacacagggccccacatcacagaggctgtcactgatcagtttatc
tttaaagctcaggatgacgctgatcctccaaaccaatcagatgagaacaccttcttcatt
aggattctccctattgacgatgttccacctgaactttttcctggcacatctttacagatt
actgtccatgagtatcaggtgactagtcttaacaagactgttcttcgttacactgatttg
gattctgatgacagagatctgaaatacacaataactcagccaccaacagacacagatgaa
aatcatcctgtcagatttgggtcagtagttttaacagagcagcctcacactgaggtaagc
gagttcactcaagcacaagtgaaccatcataagatttcctacagcccaccagatatagaa
ctgggcatcacagcccatgtttcacagttccatttcattgttgaagacactgctgggaac
agtgtaaaagggattttcaccatattggtgcaacctgtaaacaacaaacccccagagata
actaacactggcttcacagtctttgagcgaggaatgcatatgattacaaatgctgagctt
gatactactgaccttgatacagatcgtaaacagatttcctttactctaattcagagtccg
caacatggtcaggtccagttaagctttgctgatttaattaaagacagcactttcagctta
gcagatatctcagaaggcagaatctcttatgtccacaatggggatgagacaaccaatgat
gcttttaaactcgatgtcagtgatggtgtccatgttgtaccaattacagtaaaaattata
gtgaagccaattgacgatgaaatgccaactttgactctcccagcgggaactcttggttct
cacgtgtctgtcttggaaaatggtgctactgaaataacagtcagtgttatccaggggaaa
gatgaagacacagatgacctgagattgacctttattgttgaggatgcccctgcatatgga
gagatcttggtgaatggacttccttctaacatgttcacccaagctgatataattaatggt
ttggtgagatatacccatacaggtggtgagattgggttttcctcaaaagaggacatgttt
aacttaacccttactgacatgtctgatgagtgggctgtaggaggaaatacaattactgga
gtgtctgttcatgtcaccattctcccagtggacaacaaggcccctgtggtaacagtggta
cctacatttaatgtcactgaaggaaacaaaaacataattggaggccaccaaataattgtt
aaggatgcagatacactcactgaagatatcttgtgtactatcattgtccagccgaattca
ggttatatggagaacatctctccagcaccaggttctgagaagtcccggtctggcacagcc
attagtgcttttagtattacagacatcattgatggccatatctgctatgtccaaagcatg
cataaaagagttgaaccagttgaggatagatttacattcagttgctcagatggtgttaac
ttttcagagagacaaattttcccaattgtaattatccctaccaatgatgagaagccagaa
atatttatgagagaatttgtggtgatggagggtatgaatgtcatcattgacacacctata
ttgactggagttgatgctgatattccggttgaagatttgacttttatcattacaaagcca
ccaaaacatggttttattcttgaccagctaatcactggctctctcccagttactaacttt
actgtggagcaaatcagggaagcttctagcattatttatgagcatgatgattctgagagc
acagaggaccaatttaatgtgattctcactgatggaaaacataatgtagaaggtactgta
atgattatgattattgctgttgatgatgagactccaagattggctattaacgatggtttg
gaagttgaaattggggagacaaaagaaataaataataaaattttgaaggcgactgattta
gactcagaagatagcacacttacctttataattcgatatggtccaggtcaaggcattcta
cagagaaaaacagaacatgggttttttgagaacatcacagttgggatgaacttcacacaa
atggaactggacaatggttatgttctctatactcacaatggacaagaaggtattcgtgac
attataaagtttgatgtaaccgatggtcataacccactaattgacagatatttctacata
tctgtgagcaacattgacagggtgtttcctgaagttattagcaaaggggtatccctgaaa
gaaggtggaagtgtgatgcttaccactgacctactcagtacaagtgatctcaatagccca
gatgaaaaccttgtcttcactatcaccagagccccagtaaggggacatttggaaagcact
gacactcctggaatgccaatcgtgtctttcactcaacttcagctggctggaagtaaaatc
tactatattcactcttcagatgatgaaataaagatggacagttttgagtttgaggtcact
gatgggtataaccctgttttccgcacttttcgtgtatcgatagttgatgttgacaataaa
aaacctgtcctgacagtacatgagctcttggtttcagagggacattcaaaacttatcaca
ccatttgagctgactgtagaagatcaggatacagcagaggaattcctgaagttcaccatc
actcagttgcctatccatggtaaactgctctttaacaacagccatccagttactaccttc
acgaaacatgacctgaatgaaaacctaatcagttacaagcatgatggcacagagtcgact
caggacagcttttcttttactgtcactgatggaacacacactgatttttatgtatttcct
gatacagtgtttgaaactcgtaggcctcaagtcatgaaaattactatttcatcaatagac
aatggtgtaccacaaattgtggtgaacaaaggtgttcaaacgttgaaggtcttgccaatg
agccacctaggctatcctatcactagcaaagtgctgaaggcagaagacagggacagcatc
ccagacaccctggttttttacatcaccacacaaccagagcatggctacctgatcaacctt
cagaaggggaatgattccatcattacattcactcaagccgacattgatgacctgaagatc
tgctatgtgctgaaagataacaacaatgccaccagtgacacctttatattttatgttgaa
gataatggtcggaataaactgaaggagcagcacttccgcctggattggtcctggatctct
ttacaaaaacaacactacgtggtggacgagcaggccggggtactggaggttgtgcttaga
cgtagaggatacctgggggaaacgtcttttgtagcaattggtacactggacggcagtgct
gagaaggacaaagacttccgggggaaatttcagaaacaggtgcagtttaacccaggccag
agcacagcaacatggaggatcaaaattcttcctgatgagaggtatgagcagtctgagacc
ttcaacatcattctgtccgagccagttatgggggcactggagtctccagcagtggccaca
gtggagatcatggatccagaagatgagtctacagtcttcattccccaggcaactcttgtt
gtcgaggaagacattggagagctgctggtaccgatacacagaagaggagacttgagtgag
gagctgatggtgctctgctacacgctgcaaggttcagctacaggtacagtccccagcacc
gttctttctttctctgactacatctccagactggagggacagagcagcatcctacgtttt
gaaaaagaagagacagagaagaattgccgcgtggtgataatcgacgactcactatacgag
ccagaggaaagctttaacgtgtccctcagcgtagtattaggtggccgcttaggatctaaa
taccccagcacacgcatcaacatcctgccggacttggacgatgctcctgtgttctacttc
ggagattcagagtacaatgtggatgagagccaaggtcacattgatgtgcgagtgtggagg
acaggaacagatctctccaaagcagccacagtcactgtcaaatcccgtaaaacggatccg
gtgtcagctgaagctggagtggactatgtgggcattagtaagaatttggactttggccca
ggggtgaacatgcaaaccatccgggtcaccattctagacgatctcggccagccgcttctt
gaaggcattgagaaatttgagctggtcctgcgcttgcccatcaatgcaattttaggagag
ccagctaaagccaccatcttaattaatgataccatctcagacctgccaaagatgcagttt
aaacatctacttctaaatggagaagagagcgatagacgtctcactgctgtggtccagcgc
agtggagatatctcacaccaatccactgtgcgctgttacacacgccagggatctgctcag
gtgaccattgactttgaagagagacccaacactaatgcatcagtcatcaccttcctacca
ggtgatacggagaagccatgtgtgttaactttggtggatgactcagtgtatgaagacgag
gaggagatgaggcttgtgctcgggagcgctacgagtggctccccatatggtgcatctatt
ggcacaaagaacgagacacttgtcaagcttaaagacagtgctgacaaaccaattatcaag
tttactgagacaaagttgagtgtgaacgagccaaaggagtcagggaagataagcattgtg
cggatccctgtgcatcgagtgggagattcctccaaagtgtctgtagtgagagtgcacact
aaagatggttctgctgtgtcaggagaagactatcatcccatctctaaggatgttgaattt
aaggaaggtgaaacagaacactttgtggaggtggaggtcctgtttgatggagccagagaa
atgagagaatccttcactgtccatctcaaacctgatgagaacatggtggctgagatccag
atgtctaaggctatagtgtacattgaagagaccaatagcatggccgacgtcacattcccc
tcactgccgcatgttgtgtctctgctgcactatgatgatgtcagaaggactatgtacaat
gctcacccaccagcaggctatccagtggtctgtgtgacagcatgcaacccaaaataccca
gaatatgagaaaacaggctccatatgtgcaagtgagcacatcaatgacacgctaacacac
tatcgctggctcatcagtgcccccactgggcctgatggcgtcaccagccctatgagggaa
gtggacatcgacacctttttcacctcctccaagataatcacgctggactccatctacttc
caggccggctctcgggttcagtgtgctgctcgtgcagttaactccaatggagatgagggc
ctggagctcagcagccccattgtctccattagcatggaagagggaatgtgtcaccctcgt
aaggtgggcacagtaggtgctgagcctttttctgccaagctacactataccggcactgag
gatccggaacacgcaaacctaatcaagcttagtgtcaccatgccccacacagatggcatg
cttcctgtgctgtctacccgtgctctttctaacttcgagttgaccctgagtccggatggc
agccgtgttggaaaccaccgctgctccaatctgctggactttgacgaggttcccactcgc
cacggcttcctgacaaaagccacaaagactgtggaacaagtgggagaaagcgctccttac
caatataactctactatgaggggcctgaacacattacgtttctacaggaacctcaacctg
gaagcctgcctgtgggagtttgtgagttattatgacatgtctgagctcttcacagactgc
ggcgggagcatcgggactgacggacaggtgctaaatctagtgcagtcctatgtgactctg
cgtgtccctcttcatgtctcctacgtgtttcactcacctgtcggcaccagcggctggcag
cattttgacctgcagtctgagctgcggcttacttttgtttacgacactgccatcttgtgg
aaagatggcgtcggcagccctcctcaagccgagctgcaaggagctctttacccagccagt
atgaggattaatgaaatgggctgtctggtggtcaacttccgcaccaaggctcattttcgg
ggactgtttgtggcctcacatcaggcatcttctttgacctcattggtcataagtacagcc
cacccagggttaacctttaacctttcattggtcagaaccgagccaacctacacccagccc
atgcagcagtggaggttcacttcagattttgctgtgcgtgattactctggtacctacaca
gtaaagctaatcccctgcactacagtactaaacatggagtactctgttcctgcagtgtgt
gaccccagagagccggtcacatttgacctggacatcagattccagcaggtgagtgacccc
gttgctgtggagttcaatctgaacacacagatgtttctgctgtcgaagagatctgtctgg
ctctctgatgggtctatgggctttggacaggagagtgatgctgctttttcacagggtgat
ataatatatggcagagtgatggtggatccagtgcagaacttgggagactcgtttcactgt
aacatagagaaggtttatttgtgcactggagcagatggatatgtgcctaagtacaacccc
accaagtttgagtttggctgcttggcagattcaccttccctactatacagattcaaaata
attgacaaagcacagccagagactcaggctctgagttttggtgatatgaagttcaatgca
gtgctggcagtagatgacccatcagccctctcgctagtgaagcagcccagctcagatggg
ttccgactggactcttctcccttattccaggtggcagcaggccgtgagtggtacatccac
accatctacactgtacgctccagagacaatgcaaatcgtgggatcggcaaaagaagtgcg
gagtaccattcttttgcggcgcacaacactcgtgccaggcgctctaatcaggacatgcct
gctatcgccgaaatgatcagtgccgagcacaatcgaggcaccaacatcatgcacatcatt
ctggagcaccagcaggcagtgcaggatggggaggttcctgccgaaggcctggtacagcat
gaaatggccaaaagtggcactggagacgaggcagtgatggtagggggagtttcagttggg
ctgctgctcttcggtctcatcatagcagtgcttttactgatgctgcggtcacagagacga
ccagttaaggatgtgagaaagaaatcagggaaggatggattaacagtctctggcagcaag
cagccagttattttgaggagcggttttgaaggcagcgatggctctgaggtgtaa
DBGET
integrated database retrieval system
