Silurus meridionalis (southern catfish): 124394413
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Entry
124394413 CDS
T08004
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124394413 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124394413 (prpf8)
Spliceosome [BR:
smeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124394413 (prpf8)
Complex C
U5 SnRNP specific factors
124394413 (prpf8)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
124394413
NCBI-ProteinID:
XP_046718547
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All DBs
Position
12:16460672..16474115
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGVPPPAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVAEWFYEHQPLKDTTKYVNGTTYRRWQFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDLNLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
STKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFVVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
ATESAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcatttccttacagaggagtcccaggtgggatgccaccaggcgttcctcct
cctgctcctgttcctgattacatgaccgaggagaaactgcaagaaaaagcccgcaaatgg
caacagctgcaggcgaagcgctattcggagaaaaggaaattcggttttgtggatgctcag
aaggaggacatgccccctgaacatgtgcgcaaaattatcagggaccatggagacatgacc
aacaggaagttccgtcatgacaagagagtgtaccttggggctctgaaatacatgcctcat
gcagttctcaaactgttggaaaacatgcctatgccatgggagcagatccgagatgtacct
gtgctttatcacatcacaggagctatttcctttgttaatgaaattccctgggtcattgag
cctgtctacatcgcacaatggggtgcgatgtggatcatgatgcgacgtgagaaaagagac
agacggcacttcaagcgcatgcgtttccctccctttgatgatgaagagcctcctttggat
tatgcagataatattcttgatgtggagcctctggaggccatccaaatggagctggaccct
gaggaggacagctcggtggcagagtggttttatgagcatcagccactgaaggatacaaca
aagtatgtcaatggaactacatacagacgttggcagttcagtctgccaatgatgtctact
ttgtatcgtttggctaatcagttgcttactgatttggtggatcgtaactacttttacctg
tttgacctgaaagcctttttcacttcaaaggcattgaacatggccatccctggaggaccc
aaatttgaacccctagtcagagacctcaatctacaggatgaagactggaatgagtttaat
gacatcaataagatcatcatcagacaacctattaggaccgaatacaagattgctttccca
tacttgtacaacaatcttccccatcacgtgcaccttacatggtaccacacacctaatgtg
gtgttcatcaagacagaggatcccgatttgccagcattttactttgacccactcatcaat
cccatctctcaccggcactcggttaaaagccaggagccactgcctgatgatgacgaggaa
tttgaacttcctgagtacgtggagcctttcctcaaagagacacccctgtatactgacaac
actgctaatggaattgctttattgtgggcacctcgtccgttcaacttgcggtcagggaga
actcgtcgtgctattgatgttcctctcatcaagaactggtaccgtgagcattgccctgcg
ggacaacctgtaaaagtacgtgtttcctatcagaagcttctgaagtactatgtgcttaat
gcactgaaacacagaccccctaaagcacagaagaagcggtaccttttccgttccttcaag
tccaccaaattctttcaatccacaaagctggactgggtggaggtgggactccaggtttgc
cgacagggatacaacatgctgaacctgctgattcacagaaagaacctcaactacctgcac
ttggattacaacttcaacttgaagccagtgaaaaccctcaccacaaaagagcgtaaaaag
tcccgtttcgggaatgcgttccacttgtgccgtgaggttctgcgtctgagcaaactggtt
gtggatagtcatgtgcagtacagactggggaatgttgatgcattccagttggcagatgga
ctgcagtatatctttgcccatgttggtcaactgactggcatgtatcgctacaagtacaag
ctgatgaggcagatcaggatgtgcaaggacttgaaacatctaatttactatcgcttcaac
acaggtccagttggaaagggtccaggctgtggattctgggctccaggatggagagtgtgg
ctcttcttcatgaggggcatcactcctctcctggagagatggcttggcaacctgttggcc
aggcagtttgaaggtcggcactctaagggagttgcaaaaactgtgactaaacagcgtgtg
gagtctcactttgacttggagctgagagcagctgtgatgcatgacatcttggacatgatg
cctgagggaatcaaacagaacaaggccaggacaattctacagcatcttagtgaatcctgg
aggtgctggaaggccaacattccctggaaggttccagggcttcccacacccattgaaaac
atgatcttgagatatgtcaaggccaaagctgactggtggaccaacacagcacattacaac
agagagcgaatcaggcgaggagcaactgtggacaaaactgtctgcaagaaaaacctcggc
cgcctcacacgactctacctgaaagctgagcaggagcgacaacacaactacctaaaggat
ggaccgtacatcactgctgaagaggcagtggctatctacaccaccacagtgcactggctg
gagagtagacgcttctctccaattcctttcccccctctttcatacaagcatgacaccaag
ttgcttatcctggctcttgagagactcaaagaagcttacagtgtgaaatcgaggttgaat
cagtcccaaagagaagagttgggcctgattgagcaggcatacgacaatccccacgaggct
ctgtccaggatcaagcgtcatctcctcactcagagagcattcaaagaggtgggcattgag
tttatggacctgtacagtcacttagtacctgtgtatgatgtggagcctctggagaagatc
acagatgcttacctggaccagtatttgtggtatgaggctgacaagcgcaggcttttccca
ccatggatcaaacctgcagacacagagccgcctccactgctggtctacaagtggtgccaa
ggaatcaataacctgcaagatgtgtgggagaccacagagggagagtgtaatgtcatgctg
gagtcacgctatgagaagatgtacgaaaagattgacttgaccctgcttaacaggcttctg
cgtctgatagtcgaccacaacattgccgattacatgaccgcaaagaacaatgtggtcatc
aactacaaggacatgaaccacaccaactcatacggcatcatcagaggcctgcagtttgcc
tccttcgttgtgcagtactatgggctggtgatggatctgcttgttctgggtcttcatcgt
gccagtgagatggctggacctccacagatgcccaatgatttcctcagcttccaagacagt
gctacagagagtgcccaccccattcgcttgtactgcagatacatagaccgcattcacatg
tttttcaggttttctgctgatgaggccagggatctgatccagcgctaccttactgaacac
cctgatcccaacaacgagaacattgtaggctacaacaataagaagtgctggcccagagat
gcaagaatgaggctgatgaagcatgatgttaacctgggccgagctgtattctgggacatt
aagaatcgccttcctcgctctgtgaccaccattcagtgggagaacagctttgtgtcagta
tacagtaaagacaaccctaacctgctcttcaacatgtgtggctttgagtgccgaatcctg
cccaaatgccgtaccagttatgaggagttcacccacaaggatggcgtgtggaacctgcag
aatgaagtgacgaaagaaaggactgcacagtgcttcctgcgagtggatgatgaatcgatg
cagaggttccataaccgagtgcgtcagattctcatggcttctggatccactacatttacc
aagattgtgaacaaatggaatactgctctgattggtctgatgacttatttccgtgaggct
gtggttaacactcaggagttgcttgaccttttggttaaatgtgaaaataagatccagacc
cgtatcaagattggtctgaactccaaaatgcctagccgttttcctcctgtcgtcttctac
acccccaaagagttaggaggtctgggcatgctttctatgggtcatgtgctcatccctcag
tcagacctgaggtggtccaaacagactgatgtaggcatcactcacttccggtctggtatg
agtcatgaggaggatcagctgattcccaatctgtatcgctacatccagccatgggagagt
gagtttattgactctcagagagtctgggctgagtatgctctcaagaggcaggaggccatt
gcccagaacaggcgtttgactcttgaagatttggaggattcttgggacagaggtattcct
cgtatcaacaccctgttccagaaagacagacacacgttggcctatgataagggctggaga
gtcagaacagacttcaagcagtatcaggtgcttaagcaaaatccgttctggtggactcac
cagagacacgatggtaaactgtggaatttgaacaactaccgcacagacatgattcaagca
ctaggtggggtggaaggaattttggagcacacactgttcaagggtacatactttcccacc
tgggagggtctgttctgggaaaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcacagagatctggtctaaaccagatccccaatcgacgattcacattgtgg
tggtctcccacgatcaacagagcaaatgtatacgtgggcttccaggtgcagttggatctc
actggaatcttcatgcatggcaaaattcccaccctcaaaatctccttgatccagatcttc
agagctcacttgtggcagaagattcatgagagcattgtcatggatctgtgccaggtgttt
gaccaagaactggatgctctggagattgaaactgtccagaaggaaaccatccatcctagg
aagtcttataagatgaactcctcttgtgcggacattctgctttttgcatcctacaagtgg
aacgtctccagaccatcactcctggctgattccaaggatgttatggacagcaccaccact
cagaagtactggattgacattcagctcagatggggagattatgactcccatgacattgag
agatatgcgagggccaagtttttggactacaccacagataacatgagtatctacccatcc
cccacaggggtgctcattgccattgatctggcatacaatctgcacagtgcgtatggaaac
tggttccctggcagcaagcctctgatccagcaggccatggcaaagatcatgaaggccaac
cctgccttgtacgtgctgagggaacgaatccgcaagggtctgcaactctactcctctgag
cccactgagccttacctgtcctcacagaattatggagaactcttctccaatcagatcatt
tggtttgtggatgacaccaatgtgtatcgagtcacaatccacaagacctttgagggcaac
ttgacaacaaaacccatcaatggggcaattttcatctttaatccaagaactgggcaactt
ttcttaaagatcattcacacatctgtgtgggctggacagaaacgtctgggacagctggcc
aagtggaaaactgctgaggaagtggctgctcttattcgatcactgcctgttgaagagcag
cccaagcagatcattgtgaccagaaagggaatgttggatcctcttgaggtccacttgctg
gatttccccaacattgtcatcaaaggctccgagctacagttgcccttccaggcctgtcta
aaggtggagaagttcggggacctcattctaaaggccactgagccacagatggtcctgttt
aatttgtatgatgactggctgaagaccatttcttcttacactgccttctcacgtctcatc
ttgatcctgagagccctccatgtaaacaacgatcgtgcaaaggtgatcctgaagcccgac
aaaactaccatcactgagccacatcacatctggcccactttgactgatgaagagtggatc
aaggtggaagtgcagcttaaagatctcattttggctgactatggtaaaaagaacaatgtg
aatgtggcttctctgacacagtctgagatcagggatatcatcttgggtatggagatctct
gctccatctcagcagaggcagcagattgctgagattgaaaagcagactaaagagcaatcg
cagctaacggccacacagactcgcaccgttaacaaacacggtgatgaaataattacctca
accaccagcaactatgagacccaaaccttttcttcaaagactgaatggagagtcagggcg
atctctgcagccaacttgcacttacgtaccaaccacatctatgtgtcttctgatgacatt
aaagaaactggttacacatacattctgcctaagaacgtgctaaagaagttcatctgcatc
tctgacttgcgtgctcaaattgccggttatctgtatggcacaagtcctccagataaccca
caagtgaaagaaattcgctgcattgttatggtgccacaatggggcacccatcaaactgtt
cacctgcccggtcagctgccacagcatgaatatctcaaggaaatggagccgcttggttgg
atccacacccagccaaatgaatcgcctcagctgtcacctcaggatgtcaccacacatgct
aaagtcatggccgataatccatcctgggatggcgagaagaccatcattattacctgcagt
ttcactccaggatcttgtacgttgactgcttataagctgactcctagtggatatgagtgg
ggcaggcagaacacagataaaggcaacaaccccaagggttacctgccatctcactatgaa
agagttcagatgctgctgtctgatcgttttcttggcttcttcatggttcctggccaagtg
tcctggaattacaatttcatgggtgttcgacatgaccccaatatgaaatacgagctgcag
ctgtcgaacccgaaagagttttatcacgaggttcaccggccctctcacttcctcaacttt
gcctcgcttcaggagggtgagatctacaacgctgaccgtgaggatatgtacgcttag
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integrated database retrieval system
