Silurus meridionalis (southern catfish): 124394423
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Entry
124394423 CDS
T08004
Symbol
hif1al
Name
(RefSeq) LOW QUALITY PROTEIN: hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04137
Mitophagy - animal
smeo04140
Autophagy - animal
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124394423 (hif1al)
04137 Mitophagy - animal
124394423 (hif1al)
04148 Efferocytosis
124394423 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124394423 (hif1al)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124394423 (hif1al)
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
124394423
NCBI-ProteinID:
XP_046718563
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Position
12:complement(11755961..11768376)
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AA seq
628 aa
AA seq
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MTTTVTKRSSSDQRKVRLRDAARCRRSQETEVFYELAHSLPLSRRITSHLDKAGIMRVTL
SYLRMHHLLDSSWTKASPAAKEEDDPTDAFYQQALAGFILVLSEDGDMVFLSDNVSKFIG
ITQLELLGQSVYDYIHPCDQEELRDLLTTKPGLFKKKSEIFTECNFFLRLKSTLTSRGKT
VNMKSATWKVVHCTGHMKTLNQEGEGFSPAGSFMTLLCEPIPHPSCVEFPLDSNTFLTRH
NMDLHFNQCDGRVTELVGYHPSDLIGRSAYDFFHALDFDHLTRSLHILLSKGQVCTSRYR
FLAKNGGFVWTETQATVLYNNKTSQPEAVVCLNFILSAVEEADTVFSIEQTRCDMTLDKL
HLIKVEDSEDEMSSSSSSELFHSLKDNPEDLLQLAPAPGDTIIPLTEPSELYFGPPSSPN
TVPECPKDLCXPKLRQLLSPIFDSSCPTSPELSSGDEFLMDTGEVEKFFADKPEETHTKP
MEDLDDMDLDMLAPYISMDEDFQLTFLPQLPESETQPAKVSTTTSKKRGLEEEEDMPSLT
TSWEKRRKNLSIEDEFLLAHSSMMDLQVAGSLDELEPERWKQSRLLTDRDPVLGGTQSLG
DTAGLMRESFVAQPPDLMALTGTISSLS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgactgtgacgaaaaggtcgagctcggatcaaaggaaggtgcgtctgcgggat
gcggctcgctgtagacggagtcaggagacagaagtgttctacgagcttgcccactcgttg
cccctgtcacgccgcatcacctcccacttagacaaagctggcatcatgagggtgaccctc
agctatctgcgtatgcaccaccttctcgactcctcatggacaaaggcatcgccggcagca
aaggaagaagatgatcccactgatgcattctaccagcaggcacttgctggctttattctg
gtcttaagtgaagacggggacatggtcttcctctctgataatgtcagcaagttcatcggc
atcacgcagctggagttgctcggccagagtgtgtacgattacatccatccatgcgatcaa
gaggagctgcgagaccttcttaccaccaaacctgggctctttaagaagaagtctgagatt
ttcacagagtgcaacttcttcctgagactgaaaagcacacttacaagtcgtggcaaaacc
gtcaacatgaaatctgccacctggaaggtggttcactgcacaggccacatgaagacatta
aaccaggaaggggaaggcttctcccctgcagggagctttatgaccctgctgtgtgagccc
atcccccacccgagctgcgttgaattcccactggacagcaacaccttcctcacacgccac
aacatggacctgcacttcaatcagtgtgacggccgggtgactgagcttgttggataccat
cccagtgatctaattggccgatctgcctatgatttcttccatgcacttgattttgatcat
ctgacaaggagcttgcatatccttctctccaaaggtcaggtgtgcactagccgctaccgt
ttcctggctaagaacggaggatttgtttggacagagacccaggccacagtgctctacaac
aacaagacctcacagcctgaagctgttgtctgtctcaacttcattctcagtgctgtggag
gaggcagacacggtgttctccattgagcagacacgctgtgatatgacgctggataaattg
catttgattaaagtggaggactctgaggatgagatgagtagcagcagcagcagtgagctt
ttccacagtttgaaggacaatccagaggatctgctgcagctagcaccagccccaggagat
accatcatcccactgacagagcctagcgagttgtacttcggcccaccatccagccccaac
acagtgcccgaatgtccaaaggacctgtgtnaccccaaactccgccagctcctctcaccc
atattcgacagctcctgccccacttcccctgagctgagctcaggtgatgagtttcttatg
gatactggtgaggtggagaaattctttgctgacaagcctgaggagactcatacaaagcca
atggaggatctggatgacatggatctggatatgttggcaccatacatctccatggatgaa
gacttccagctgaccttcttgccccaattgcctgagtcagagacacagcctgctaaagta
tcaaccacaacgtctaagaaaagaggcctggaggaagaggaagacatgccgtctctaaca
accagctgggagaagagacggaagaatctcagcatagaggacgagtttctgcttgcacac
tcctcgatgatggacctgcaggttgcaggcagtttggatgagctggagcctgagcgttgg
aaacaaagtcgacttctgacagacagagaccctgtgctgggaggaacacaatcacttggt
gatacagcaggtttgatgagggagtcttttgtagcacaaccccctgatttaatggcttta
accgggactatatcttcactctcctga
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