Silurus meridionalis (southern catfish): 124394425
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Entry
124394425 CDS
T08004
Symbol
cltcb
Name
(RefSeq) LOW QUALITY PROTEIN: clathrin, heavy chain b (Hc)
KO
K04646
clathrin heavy chain
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04142
Lysosome
smeo04144
Endocytosis
smeo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124394425 (cltcb)
04142 Lysosome
124394425 (cltcb)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124394425 (cltcb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124394425 (cltcb)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124394425 (cltcb)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
124394425 (cltcb)
Exosome [BR:
smeo04147
]
Exosomal proteins
Proteins found in most exosomes
124394425 (cltcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
124394425
NCBI-ProteinID:
XP_046718566
LinkDB
All DBs
Position
12:6710633..6732877
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAQVVIIDMSDPNS
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISPKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAGGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPSKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPTEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDAERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEXAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGHAAAQSGNWEDLVKFLLMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPSDAWKESQFKDIVTKVANVELYYKAVQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
FKVKQLSLVKPYLRSVQNHNNKSVNEALNNLFIIEEDYQALRTSIDAYDNFDNISLAQSL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLQWFLQ
EEKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLDASESL
RKEEEQATEAQPIVYGTPQLMLTAGPSVPVPPQQPYGYGYTAPAGYGQPAQPGFGYGM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattttgcctattcgctttcaagagcacctgcagctccaaaacctgggcatc
aacccagcgaacatcggcttcagcaccctcactatggagtcggacaagttcatctgtgtg
cgagaaaaggtcggagagcaagcgcaggtggtcatcatcgacatgagcgaccccaactcg
cccatccgcaggcccatctctgcagatagcgcaatcatgaacccggccagcaaagtgatc
gcccttaaagacgcggcgaaaaccctccagattttcaacatcgaaatgaagagcaagatg
aaggctcacaccatgaccgacgacgtgacgttctggaagtggatctccctgaacaccgta
gcgctcgtaacggacaacgccgtctaccactggagcatggaaggagattcgcaacctgtt
aaagtgttcgaccggcattccagcttagcaggctgccaaatcatcaactatcgcaccgac
gccaaacagaagtggcttcttctcattgggatttctgcacaacaaaaccgtgttgttgga
gcgatgcagctgtattctgtggacaggaaggtgtcccagcctatcgagggccacgccgca
ggctttgctcagttcaaaatggaaggaaatgctgaagaatccacgctgttttgctttgct
gttcgtggccaagcaggaggaaagctgcacattattgaagtcggaacccctccaactggc
aaccagcctttcccgaagaaagccgtagacgttttcttcccaccagaagcccaaaacgac
ttccctgttgctatgcagatcagtcccaagcaggatgtggtttttctcatcaccaaatat
gggtacatccacctgtatgaccttgaaactggcacctgcatctacatgaataggatcagc
ggggaaaccatcttcgtcaccgctcctcacgaggctacatccggcattattggcgtcaac
aggaagggacaggtgctttcagtgtgcgtggaggaggagaacatcatcccctacatcacc
aacgtcttgcagaaccccgatctggcactgcgcatggctgtacgtaacaacttggctggc
gctgaggagctctttgcacgcaagttcaacactttgttcgcagggggcaactattccgag
gctgccaaagtagccgccaatgcaccaaagggcattttgcggaccccagacaccattcgg
cgtttccagagtgttcccgcccagccgggccagacctccccgctgctccagtacttcggc
atcctactggatcagggtcagctgaacaagtttgagtctctggagctctgcaggcctgta
ttgcagcagggccgcaagcagctgctggaaaagtggctgaaggaagataagctcgagtgc
tccgaagaactgggtgatttggtgaaatctgtggacccaactctcgctctcagtgtctat
ctgagagcaaatgtccctagcaaagtcattcagtgttttgccgagactggccagttccag
aaaattgtactgtatgcaaagaaggtcggctacactccagactggatctttcttcttcga
aatgtgatgcggatcagtccggagcagggcctgcagttctcccagatgctggtgcaggat
gaggaaccactggcggatattacccagatcgtggatgtgttcatggagtataacctgatc
cagcagtgcacttccttcctgctggacgctctaaagaacaaccgacccactgaaggccca
ctgcagacgcggctgctggagatgaacttgatgcatgcgccgcaggtggctgacgctatt
ctgggaaaccaaatgttcacccattacgaccgagcccatgtggcccagctgtgtgagaaa
gccggattgcttcagagagctctggaacactacactgacctgtatgacatcaaacgcgct
gtggtgcacacccacctgctgaaccccgagtggctggtgaacttttttggctcgctgtca
gtggaggactctctggagtgtctgagagccatgctttcggccaacatccgccagaacctg
cagatatgcgtccaggtggcctccaaatatcatgagcagctcaccacccagtctctcacc
gagctctttgagtcttttaagagctttgaaggtctgttctattttcttggctccattgtg
aacttcagtcaggacccagaggtgcatttcaagtacattcaggcagcctgtaaaactgga
caaatcaaagaggtggagagaatctgccgggagagtaactgctacgatgccgagcgtgtg
aagaattttcttaaggaagcgaaactgactgatcagctgcctctcatcattgtgtgtgat
cgctttgattttgtccacgacctggtcctttatctgtaccgcaacaatctgcagaagtac
attgagatttacgtgcagaaggtgaaccccagccgcttacctgtggtgattggtgggctg
ttggatgtggattgttcagaggatgtcattaagaacctgatcctggtggtccgaggacag
ttttccaccgatgagctggttgctgaggtggaaaagaggaacagacttaagctgctgttg
ccctggctggaagcccgtattcatgagggatgtgaagaacctgccacgcacaatgccctg
gctaagatctacattgacagcaacaataaccctgagcgattcctgagagagaacccgtac
tacgacagccgcgtggtgggcaagtactgcgaaaagagggaccctcatctggcttgtgtg
gcttacgagagaggacagtgtgaccaagagcttattaatgtatgcaacgagaactccctc
ttcaagagtctgtctaggtatttggtgcgtcgtaaggatcctgagctgtgggccagcgtt
ctcctggagagcaaccctttcagaaggccactgattgaccaggtggtgcagactgcactc
tcagagacccaggacccagaagaggtgtctgttacagtcaaagccttcatgactgctgat
ctgcctaatgagctgattgaacttcttgagaagatcgttttggataactctgttttcagt
gagcacaggaacctgcaaaacctcctgatcctgactgccatcaaagccgaccgcacccgc
gtaatggagtacatcaaccgcctggataactacgatgcccctgacattgccaacatcgcc
atcagcaacgagctttttgaagaggcttttgccatcttcaggaagtttgatgtcaacaca
tctgcagtgcaggtcctgattgagcacattggcaacctggaccgggcctatgagnttgct
gaacgctgcaatgaacctgcagtgtggagccagttggctaaagctcagctgcagaagggt
ctggtaaaggaagctattgattcctacatcaaggccgatgacccatcagcatacatggaa
gtgggacatgctgcagcccaaagcgggaactgggaggatttggtgaagttcttgctgatg
gcgcgtaagaaggcccgtgagtcatacgtagagaccgagctgatctttgcattggctaaa
accaaccgcctggctgaactggaagagttcatcaacggcccaaacaacgcccacattcaa
caagttggtgatcggtgctacgatgagaagatgtacgaggcagctaagctgctgtacaac
aatgtgtccaactttggccgcctggcttccactctggtccacctaggagagtatcaagct
gctgtggacggagcacgcaaggccaacagcacaagaacctggaaagaggtctgttttgca
tgcgtagatgggaaggaattccgtctggcacagatgtgcggcctgcatattgtggtccat
gctgatgaacttgaggagcttattaactattaccaggaccgtggctatttcgaggagctg
atcaccatgttggaggcggctctggggcttgagcgggctcacatgggcatgttcactgag
ctggccatcctctattccaagttcaagccacagaagatgagggagcacttggaactcttt
tggtccagagtcaatattcccaaggtcctgagggcagcagaacaggctcatctgtgggct
gagctggtcttcctttatgacaagtatgaggaatacgataatgcgatcatcaccatgatg
aaccacccttcagatgcctggaaggagagccagttcaaagacattgttactaaggtggct
aatgtggaactgtactacaaagccgttcagttttatctggagttcaagcctctgttactg
aatgacctgctcatcgtactgtccccaaggctggatcacacacgcgctgtcaacttcttc
tttaaggttaaacagctgtctctggttaaaccgtacctgcgatctgtacagaaccacaac
aataaatcagtcaacgaagcactcaacaatcttttcataatcgaggaggactaccaggct
ctgcgtacatccatcgatgcctatgacaactttgataacatctctctggcccagagcctg
gagaagcatgagctcatcgagttcaggagaattgctgcctaccttttcaaaggcaacaac
cgctggaagcaaagtgtggagctctgcaagaaggataaactctacaaggacgccatgcag
tacgcatcagagtcgaaggatacagagctggctgaggagctgctgcagtggttcttgcag
gaggagaagaaggagtgcttcgccgcctgcctcttcacgtgctatgacctcctgcggcct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctcagtaaggtcgataagctggacgcatccgagtctttg
aggaaagaggaggagcaggccacggaggcacaacccattgtttatggcacaccccagctg
atgctcaccgcaggcccaagcgtccccgttcctcctcagcagccttacggctatggctac
actgcccctgctggctacggtcagccagcgcagcccggcttcggctacggcatgtag
DBGET
integrated database retrieval system
