Silurus meridionalis (southern catfish): 124394562
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Entry
124394562 CDS
T08004
Symbol
col4a4
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06237
collagen type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124394562 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124394562 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124394562 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124394562 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124394562 (col4a4)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124394562 (col4a4)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124394562 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124394562
NCBI-ProteinID:
XP_046718835
LinkDB
All DBs
Position
12:3511159..3558394
Genome browser
AA seq
1664 aa
AA seq
DB search
MTHPYRIASFSLTLWWLLLTHVYRSEVHAVENPEDCVQRNRSLCPCIPLKGSRGPPGSPG
EDGRQGARGPPGPQGQRGQKGRRGPEGTQGLTGPKGDVGSSGIPGNAGEDGVPGLRGPVG
PPGLPGIDGCKGSRGDPGPDGCPGPSGSTGLRGCPGPQGPKGDPACNYVMIPGRTGCDGP
PGCPGPPGLPGPCGQTGAEGKCGDAGLPGGNGAPGPRGPPGDTGKPIFGEKGDEGDPGPE
GPAGPFELIEPSEEYFPKGDKGEKGSCGVCGLPGCNGTIGPPGKTGDKGSSGCQGPTGEH
GYPGFCGKEGPQGEQGHPGIPGQCGPQGIKGISGDPGPKGETTYFSYEAGSLGEQGATGA
PGIKGDMGWMGVPGHRGPPGRCLAGLTGQLGLLGAQGPQGDKGEPGRKSTQKIPGEPGKP
GHRGLKGVQGTPGPDGFYCVPGHRGDPGFEGDQGLPGPRGFIGGKGDNGDCNCDASPNIY
GPEGLPGEPGEPGYAGLQGLPGAPGETGPDGDPGPEGSFGFPGFPGTRGMKGEKGNLFVQ
NIKGQKGQPGKTGTCGLQGVNGRRGECGNPGPAGDCGAEGDSFSGLPGDRGCPGNMGLKG
IRGPCGPQGPGIPGPVGLRGKEGDQGLPGQRGIAGRKGNKGDMQPCTPGPPGDCGPKGEL
GDQGCTGPQGNPGLRGCDGINGLKGDKGDLGNPGLDGPTGLCGPPGDPGDIGPDGKSLSG
EPGIPGTPGPTGFKGCIGDSLVGDQGPVGPCGLSGSSGAKGVPGPPGPFGTEGSPGVSGV
RGRKGEPGAIGQTGKEGSVGLCASECEIGALGDPGLPGDPGCSGKPGDNGEKGCAGPPGS
PGIGLKGDTGKPGPPGARGYCGPQGNQGTDGHCGDNGSDGLNGCPGQPGRDGLPGDQGEC
GLQGPPGLKGGNGSDGRQGCPGEDGEKGEKGCPGLPGMEGEINVITEKGKCGVPGLPGPC
GVPGVRGDKGNKGECGPDGFSGYPGPPGCENGPRGPQGPCGMPGEPGPKGLKGTKGYSGF
PGGSGDPGDPGLSGSPGKPGLCGLDGPKGERGDSIGAPGPPGLRGLNGEDGCPGTPGEEG
DSGEAGSPGQCGRPGEPGPVGKRGPCGPSGVTGPLGPRGKCGAEGPQGPCGPLGPTGASG
QPGSPGSPGPQGLHGLDGLEGVKGEPGTHGLGVPGEIGPMGLTGEKGLKGDPGPQGPIQQ
GVKGHPGPPGFSGNCGSPGPPGPRGIACKEPKHGLCGETGFIGPDGPPGLMGCIGPPGTA
IPVRGDEGEPGPMGRNGTKGRKGAHGPTGQIGVSGQLGQKGEKGDPGLNGDPGPPGLPGA
NGNPGPKGPKGQRGDTGSAGEAGEIISMGLINTISGPSGPQGPPGESGFPGFIGIPGIEG
PKGTKGPEGDPGVEGQPGSSGLTGLPGDPGEPGTRGSQGRRGQQGAPGDIGLPGPSERFN
SGFLLVIHSQSKVVPVCPQNMSMLWEGYSLLYLEGQEKAHTQDLGQGGSCMRVFSTMPFA
RCNQQACHYADRNDKSYWLTTTSALPTTPVSGLDIQPHISRCVVCEAPSPAFAIHSQGMS
IPSCPPHWMSLWIGYSFLMHTGSGDEGGGQSLTSSGSCLQDFLTHPFVECQGPRGTCHYF
TNLHNFWLTRVDEQDFSLIPEMMTLKGAAEQRNHVSRCNVCLRA
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgacacacccgtaccggattgcctcgttcagcctcacactctggtggctattactgaca
cacgtgtacagatcagaagttcatgcggtggagaaccctgaggactgtgtccagcgcaac
aggagcctgtgcccgtgtattccactgaaaggatccaggggtcctcctggatctccaggg
gaagatggaagacagggtgctcgaggtcccccgggaccacaaggacaacgtggacagaaa
ggacgtcgaggacctgaaggaactcaggggcttactggaccaaagggagatgtagggagt
tcgggaataccgggaaatgctggagaagatggagttcctggtcttcgaggacctgtcgga
cctcccggtcttccaggaatagacggatgtaaaggatccagaggagatccaggacccgat
ggctgcccagggcccagtggttcaactggattacgaggttgtccaggaccacaaggaccc
aaaggagatcctgcatgcaactatgttatgattcctggtcgaaccggctgtgatggacct
cctggttgtcctggacctccaggacttcctggaccttgtggccaaacaggtgcagagggg
aagtgtggagatgctggattaccgggtggaaatggtgctccaggcccacgaggtcctcca
ggagacacaggaaaaccaatttttggtgagaaaggagatgagggagatccagggcccgaa
ggtcctgcaggcccctttgaattaattgagccgtcagaagaatatttccctaaaggagac
aagggggaaaagggatcttgtggagtctgtggattgcctggatgtaatggaacgattgga
ccacctgggaaaacaggagacaaaggctcttcaggttgtcaaggccctacaggagaacat
ggctatcctggattttgtggcaaagaaggacctcagggtgaacaaggacaccctggaatc
cctggacaatgtggcccccaaggaataaagggaatctccggggatcctggtccaaaaggg
gaaacaacatatttctcttatgaagcaggtagtctcggtgaacaaggcgctactggagcc
cccggtatcaaaggagacatgggatggatgggtgtgccaggccatcgtggtccaccaggc
agatgtttagcaggcctgacgggtcagctagggttgctgggtgctcaaggccctcaaggt
gataaaggagaaccagggaggaaaagcacccagaaaatcccaggggagccaggaaaacca
gggcaccgagggctaaaaggggtccaaggaactccaggaccagatggattctactgtgtc
cctggccacagaggagaccctggatttgaaggagatcaaggcctacctggtccaagaggc
tttattgggggaaagggtgacaatggtgactgcaactgtgatgccagtcctaatatttat
ggtcctgaaggtttgccgggtgaacccggggaacccggttatgcaggactgcaggggctt
cctggtgcaccaggtgaaactggccctgatggagatcctgggccagagggtagttttggt
tttccaggatttccgggtaccagggggatgaaaggagagaaaggaaacctgtttgtgcag
aacatcaagggtcaaaagggacagcccggcaaaacagggacatgtggtttgcaaggagtc
aatggcaggagaggggaatgtggaaatcctgggcctgcaggtgattgtggtgcagaggga
gacagtttttcaggtttacctggtgacaggggttgtccgggaaacatgggcttaaaaggg
ataaggggtccatgtggaccacaaggtccaggcattcctggaccagtaggtcttcgagga
aaagaaggtgaccagggacttccaggacaaagaggaattgctgggcgtaaaggaaacaaa
ggtgatatgcagccctgtacacctggccctcctggagactgtggaccaaagggagagctt
ggtgaccaaggttgcacaggaccgcagggcaatccagggcttcgtgggtgtgacggaatt
aatggactaaagggagacaaaggagatcttggtaatcctggacttgatggtcctacaggg
ttatgtggacctccgggggatccaggagacattggacctgacggcaaaagtttgagtgga
gaaccagggatacctggcactcccgggcccactgggtttaaaggatgcattggagactca
ttggtaggagatcaagggccagtgggcccttgcgggttaagtggctcttcaggagctaaa
ggagtccctggacccccagggccatttggtaccgaaggctctcctggagtttctggagtt
cgaggtagaaaaggagaaccaggagcaattggtcaaaccggaaaagagggatcggttggt
ctttgtgcatcagagtgtgagattggagcattgggtgacccaggactgccaggagaccca
ggctgcagtggaaaaccaggtgataatggtgagaagggatgtgctggaccacctggttct
cctggcattggtttgaaaggtgatactgggaaaccaggcccaccaggtgctcgtggatac
tgtggtccacagggaaaccaaggaacagacgggcactgtggcgataacggttcagatggg
ctgaatggttgtccagggcaacctggaagggatggcctacctggtgaccaaggggagtgt
ggacttcaaggaccacctggcttaaaaggcgggaatggcagtgatgggaggcaaggttgt
ccaggggaggatggagaaaaaggagagaaaggttgtcctggactacctgggatggaggga
gagattaatgtgattactgaaaaggggaagtgtggggtaccaggactgcctgggccatgt
ggggtccctggtgttcgaggtgataaaggtaataagggggaatgtggcccagatggcttt
tcagggtatcctggacctccaggttgtgagaacggcccaaggggtccccaaggtccatgt
ggaatgccaggtgaacctggacccaaaggcctgaaagggacaaaaggctatagtggattt
cctggaggatctggagatccgggtgacccagggttaagtggatctccaggaaaaccaggt
ctttgtggattggatgggccgaaaggtgagcgaggagattctataggtgcaccgggacct
ccaggtctgagaggcctgaatggagaagatggctgcccaggtactccaggcgaggaagga
gattcaggagaagcgggttcacctgggcagtgtggacggcctggtgaacctggtcctgtt
ggaaaacggggaccatgtggaccatcgggtgttactggtcctttgggtcccagaggaaaa
tgcggcgcagaaggccctcaagggccttgtggacctttaggacctactggagcatcaggc
caaccaggatcaccaggttctccagggccccaaggactgcatggactggatggattagag
ggtgttaagggcgaaccagggacacacggacttggcgtacctggggaaatcggacctatg
ggtctgactggtgaaaagggtcttaaaggagaccctgggccacagggtcctatccagcaa
ggagtcaaaggccatccaggcccacctggattttcaggtaattgtggttcccctggtcct
cctgggcctcgtggaattgcctgtaaagagcctaaacatggactgtgtggtgaaacaggc
tttataggtccagacggcccaccaggactaatgggatgtataggaccaccaggaacggca
atacctgtgcggggggatgaaggggaaccaggtccaatgggtcgtaacggaacgaaagga
agaaagggtgctcatggtcccactggccagattggtgtttcaggccaacttggacaaaaa
ggtgaaaaaggagacccagggcttaatggagatcctggacctcctggcttaccaggagca
aatggcaaccctgggcccaagggtcctaaaggacaacgaggagatacaggttctgctgga
gaggcaggggagattattagtatgggactcatcaacacgatttcaggtccaagtggacct
caaggacctcctggtgaatctggctttccaggatttataggaattccgggcattgagggg
ccaaaagggacaaaaggcccagagggagatccaggagttgaaggtcaacccggatcatct
ggcctcactgggcttcctggagacccaggagagccgggtaccagaggttcacaaggcaga
cgaggccaacaaggagctccgggagatataggccttcctggtccctctgaaaggttcaac
tctggcttcctattggtcatccacagccaatcaaaagtagtacctgtgtgtcctcaaaat
atgtccatgctgtgggagggatacagtctactgtacctggaggggcaagaaaaagcacac
acacaagacctaggtcaaggaggttcgtgcatgcgtgtcttcagcactatgccttttgca
cgctgcaaccagcaagcttgtcactatgcggaccgcaatgacaagtcctattggcttacc
accacttctgctttacccaccacgcctgtctcagggcttgatatccagccacacataagc
aggtgtgtggtgtgtgaggccccgtcaccagcttttgctattcacagccagggtatgtca
atacccagttgcccaccacattggatgagcctatggattggatactcatttcttatgcac
actggttcaggagatgaaggaggtggccagtctctgacatcgtcaggaagctgcctacag
gatttcctgacgcatccatttgtggagtgccagggcccacgtggcacatgccactatttc
acgaacctccacaacttttggctaacacgtgtggatgagcaggacttcagcctcatcccg
gagatgatgaccctgaaaggagcagccgagcagcgcaatcatgtcagccgatgcaatgtc
tgcttgagggcgtga
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integrated database retrieval system
