Silurus meridionalis (southern catfish): 124394562
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Entry
124394562 CDS
T08004
Symbol
col4a4
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06237
collagen type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04518
Integrin signaling
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124394562 (col4a4)
04518 Integrin signaling
124394562 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124394562 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124394562 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124394562 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124394562 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124394562 (col4a4)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124394562 (col4a4)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124394562 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124394562
NCBI-ProteinID:
XP_046718835
LinkDB
All DBs
Position
12:3511159..3558394
Genome browser
AA seq
1664 aa
AA seq
DB search
MTHPYRIASFSLTLWWLLLTHVYRSEVHAVENPEDCVQRNRSLCPCIPLKGSRGPPGSPG
EDGRQGARGPPGPQGQRGQKGRRGPEGTQGLTGPKGDVGSSGIPGNAGEDGVPGLRGPVG
PPGLPGIDGCKGSRGDPGPDGCPGPSGSTGLRGCPGPQGPKGDPACNYVMIPGRTGCDGP
PGCPGPPGLPGPCGQTGAEGKCGDAGLPGGNGAPGPRGPPGDTGKPIFGEKGDEGDPGPE
GPAGPFELIEPSEEYFPKGDKGEKGSCGVCGLPGCNGTIGPPGKTGDKGSSGCQGPTGEH
GYPGFCGKEGPQGEQGHPGIPGQCGPQGIKGISGDPGPKGETTYFSYEAGSLGEQGATGA
PGIKGDMGWMGVPGHRGPPGRCLAGLTGQLGLLGAQGPQGDKGEPGRKSTQKIPGEPGKP
GHRGLKGVQGTPGPDGFYCVPGHRGDPGFEGDQGLPGPRGFIGGKGDNGDCNCDASPNIY
GPEGLPGEPGEPGYAGLQGLPGAPGETGPDGDPGPEGSFGFPGFPGTRGMKGEKGNLFVQ
NIKGQKGQPGKTGTCGLQGVNGRRGECGNPGPAGDCGAEGDSFSGLPGDRGCPGNMGLKG
IRGPCGPQGPGIPGPVGLRGKEGDQGLPGQRGIAGRKGNKGDMQPCTPGPPGDCGPKGEL
GDQGCTGPQGNPGLRGCDGINGLKGDKGDLGNPGLDGPTGLCGPPGDPGDIGPDGKSLSG
EPGIPGTPGPTGFKGCIGDSLVGDQGPVGPCGLSGSSGAKGVPGPPGPFGTEGSPGVSGV
RGRKGEPGAIGQTGKEGSVGLCASECEIGALGDPGLPGDPGCSGKPGDNGEKGCAGPPGS
PGIGLKGDTGKPGPPGARGYCGPQGNQGTDGHCGDNGSDGLNGCPGQPGRDGLPGDQGEC
GLQGPPGLKGGNGSDGRQGCPGEDGEKGEKGCPGLPGMEGEINVITEKGKCGVPGLPGPC
GVPGVRGDKGNKGECGPDGFSGYPGPPGCENGPRGPQGPCGMPGEPGPKGLKGTKGYSGF
PGGSGDPGDPGLSGSPGKPGLCGLDGPKGERGDSIGAPGPPGLRGLNGEDGCPGTPGEEG
DSGEAGSPGQCGRPGEPGPVGKRGPCGPSGVTGPLGPRGKCGAEGPQGPCGPLGPTGASG
QPGSPGSPGPQGLHGLDGLEGVKGEPGTHGLGVPGEIGPMGLTGEKGLKGDPGPQGPIQQ
GVKGHPGPPGFSGNCGSPGPPGPRGIACKEPKHGLCGETGFIGPDGPPGLMGCIGPPGTA
IPVRGDEGEPGPMGRNGTKGRKGAHGPTGQIGVSGQLGQKGEKGDPGLNGDPGPPGLPGA
NGNPGPKGPKGQRGDTGSAGEAGEIISMGLINTISGPSGPQGPPGESGFPGFIGIPGIEG
PKGTKGPEGDPGVEGQPGSSGLTGLPGDPGEPGTRGSQGRRGQQGAPGDIGLPGPSERFN
SGFLLVIHSQSKVVPVCPQNMSMLWEGYSLLYLEGQEKAHTQDLGQGGSCMRVFSTMPFA
RCNQQACHYADRNDKSYWLTTTSALPTTPVSGLDIQPHISRCVVCEAPSPAFAIHSQGMS
IPSCPPHWMSLWIGYSFLMHTGSGDEGGGQSLTSSGSCLQDFLTHPFVECQGPRGTCHYF
TNLHNFWLTRVDEQDFSLIPEMMTLKGAAEQRNHVSRCNVCLRA
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgacacacccgtaccggattgcctcgttcagcctcacactctggtggctattactgaca
cacgtgtacagatcagaagttcatgcggtggagaaccctgaggactgtgtccagcgcaac
aggagcctgtgcccgtgtattccactgaaaggatccaggggtcctcctggatctccaggg
gaagatggaagacagggtgctcgaggtcccccgggaccacaaggacaacgtggacagaaa
ggacgtcgaggacctgaaggaactcaggggcttactggaccaaagggagatgtagggagt
tcgggaataccgggaaatgctggagaagatggagttcctggtcttcgaggacctgtcgga
cctcccggtcttccaggaatagacggatgtaaaggatccagaggagatccaggacccgat
ggctgcccagggcccagtggttcaactggattacgaggttgtccaggaccacaaggaccc
aaaggagatcctgcatgcaactatgttatgattcctggtcgaaccggctgtgatggacct
cctggttgtcctggacctccaggacttcctggaccttgtggccaaacaggtgcagagggg
aagtgtggagatgctggattaccgggtggaaatggtgctccaggcccacgaggtcctcca
ggagacacaggaaaaccaatttttggtgagaaaggagatgagggagatccagggcccgaa
ggtcctgcaggcccctttgaattaattgagccgtcagaagaatatttccctaaaggagac
aagggggaaaagggatcttgtggagtctgtggattgcctggatgtaatggaacgattgga
ccacctgggaaaacaggagacaaaggctcttcaggttgtcaaggccctacaggagaacat
ggctatcctggattttgtggcaaagaaggacctcagggtgaacaaggacaccctggaatc
cctggacaatgtggcccccaaggaataaagggaatctccggggatcctggtccaaaaggg
gaaacaacatatttctcttatgaagcaggtagtctcggtgaacaaggcgctactggagcc
cccggtatcaaaggagacatgggatggatgggtgtgccaggccatcgtggtccaccaggc
agatgtttagcaggcctgacgggtcagctagggttgctgggtgctcaaggccctcaaggt
gataaaggagaaccagggaggaaaagcacccagaaaatcccaggggagccaggaaaacca
gggcaccgagggctaaaaggggtccaaggaactccaggaccagatggattctactgtgtc
cctggccacagaggagaccctggatttgaaggagatcaaggcctacctggtccaagaggc
tttattgggggaaagggtgacaatggtgactgcaactgtgatgccagtcctaatatttat
ggtcctgaaggtttgccgggtgaacccggggaacccggttatgcaggactgcaggggctt
cctggtgcaccaggtgaaactggccctgatggagatcctgggccagagggtagttttggt
tttccaggatttccgggtaccagggggatgaaaggagagaaaggaaacctgtttgtgcag
aacatcaagggtcaaaagggacagcccggcaaaacagggacatgtggtttgcaaggagtc
aatggcaggagaggggaatgtggaaatcctgggcctgcaggtgattgtggtgcagaggga
gacagtttttcaggtttacctggtgacaggggttgtccgggaaacatgggcttaaaaggg
ataaggggtccatgtggaccacaaggtccaggcattcctggaccagtaggtcttcgagga
aaagaaggtgaccagggacttccaggacaaagaggaattgctgggcgtaaaggaaacaaa
ggtgatatgcagccctgtacacctggccctcctggagactgtggaccaaagggagagctt
ggtgaccaaggttgcacaggaccgcagggcaatccagggcttcgtgggtgtgacggaatt
aatggactaaagggagacaaaggagatcttggtaatcctggacttgatggtcctacaggg
ttatgtggacctccgggggatccaggagacattggacctgacggcaaaagtttgagtgga
gaaccagggatacctggcactcccgggcccactgggtttaaaggatgcattggagactca
ttggtaggagatcaagggccagtgggcccttgcgggttaagtggctcttcaggagctaaa
ggagtccctggacccccagggccatttggtaccgaaggctctcctggagtttctggagtt
cgaggtagaaaaggagaaccaggagcaattggtcaaaccggaaaagagggatcggttggt
ctttgtgcatcagagtgtgagattggagcattgggtgacccaggactgccaggagaccca
ggctgcagtggaaaaccaggtgataatggtgagaagggatgtgctggaccacctggttct
cctggcattggtttgaaaggtgatactgggaaaccaggcccaccaggtgctcgtggatac
tgtggtccacagggaaaccaaggaacagacgggcactgtggcgataacggttcagatggg
ctgaatggttgtccagggcaacctggaagggatggcctacctggtgaccaaggggagtgt
ggacttcaaggaccacctggcttaaaaggcgggaatggcagtgatgggaggcaaggttgt
ccaggggaggatggagaaaaaggagagaaaggttgtcctggactacctgggatggaggga
gagattaatgtgattactgaaaaggggaagtgtggggtaccaggactgcctgggccatgt
ggggtccctggtgttcgaggtgataaaggtaataagggggaatgtggcccagatggcttt
tcagggtatcctggacctccaggttgtgagaacggcccaaggggtccccaaggtccatgt
ggaatgccaggtgaacctggacccaaaggcctgaaagggacaaaaggctatagtggattt
cctggaggatctggagatccgggtgacccagggttaagtggatctccaggaaaaccaggt
ctttgtggattggatgggccgaaaggtgagcgaggagattctataggtgcaccgggacct
ccaggtctgagaggcctgaatggagaagatggctgcccaggtactccaggcgaggaagga
gattcaggagaagcgggttcacctgggcagtgtggacggcctggtgaacctggtcctgtt
ggaaaacggggaccatgtggaccatcgggtgttactggtcctttgggtcccagaggaaaa
tgcggcgcagaaggccctcaagggccttgtggacctttaggacctactggagcatcaggc
caaccaggatcaccaggttctccagggccccaaggactgcatggactggatggattagag
ggtgttaagggcgaaccagggacacacggacttggcgtacctggggaaatcggacctatg
ggtctgactggtgaaaagggtcttaaaggagaccctgggccacagggtcctatccagcaa
ggagtcaaaggccatccaggcccacctggattttcaggtaattgtggttcccctggtcct
cctgggcctcgtggaattgcctgtaaagagcctaaacatggactgtgtggtgaaacaggc
tttataggtccagacggcccaccaggactaatgggatgtataggaccaccaggaacggca
atacctgtgcggggggatgaaggggaaccaggtccaatgggtcgtaacggaacgaaagga
agaaagggtgctcatggtcccactggccagattggtgtttcaggccaacttggacaaaaa
ggtgaaaaaggagacccagggcttaatggagatcctggacctcctggcttaccaggagca
aatggcaaccctgggcccaagggtcctaaaggacaacgaggagatacaggttctgctgga
gaggcaggggagattattagtatgggactcatcaacacgatttcaggtccaagtggacct
caaggacctcctggtgaatctggctttccaggatttataggaattccgggcattgagggg
ccaaaagggacaaaaggcccagagggagatccaggagttgaaggtcaacccggatcatct
ggcctcactgggcttcctggagacccaggagagccgggtaccagaggttcacaaggcaga
cgaggccaacaaggagctccgggagatataggccttcctggtccctctgaaaggttcaac
tctggcttcctattggtcatccacagccaatcaaaagtagtacctgtgtgtcctcaaaat
atgtccatgctgtgggagggatacagtctactgtacctggaggggcaagaaaaagcacac
acacaagacctaggtcaaggaggttcgtgcatgcgtgtcttcagcactatgccttttgca
cgctgcaaccagcaagcttgtcactatgcggaccgcaatgacaagtcctattggcttacc
accacttctgctttacccaccacgcctgtctcagggcttgatatccagccacacataagc
aggtgtgtggtgtgtgaggccccgtcaccagcttttgctattcacagccagggtatgtca
atacccagttgcccaccacattggatgagcctatggattggatactcatttcttatgcac
actggttcaggagatgaaggaggtggccagtctctgacatcgtcaggaagctgcctacag
gatttcctgacgcatccatttgtggagtgccagggcccacgtggcacatgccactatttc
acgaacctccacaacttttggctaacacgtgtggatgagcaggacttcagcctcatcccg
gagatgatgaccctgaaaggagcagccgagcagcgcaatcatgtcagccgatgcaatgtc
tgcttgagggcgtga
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integrated database retrieval system
