Silurus meridionalis (southern catfish): 124394738
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Entry
124394738 CDS
T08004
Symbol
brca2
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03440
Homologous recombination
smeo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124394738 (brca2)
03460 Fanconi anemia pathway
124394738 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124394738 (brca2)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124394738 (brca2)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124394738 (brca2)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
124394738 (brca2)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
124394738 (brca2)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
124394738 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
124394738 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
124394738
NCBI-ProteinID:
XP_046719130
LinkDB
All DBs
Position
12:20568868..20586096
Genome browser
AA seq
2558 aa
AA seq
DB search
MFDDFFHKIELELGPLNSGWFEELTARASDDGGKNTTLVGGDSSAQKDKGIFRAPAKMPV
LDSQSMCSTPRIFRCRRPHSPASGLEDSPDSGLQNLFPVLPGTESSPCLFSLAKDSQQFE
KDWGSVKTSECKGLLDTPTGLTTQATSAQRICESLGAQFNPDLSWSSSFNTPSALTPTVI
LSKTEGQSSPIVRKLFPSLSKCSESTSASTSGPQHNDALTDTNDQAEEQKSDSSSINLEG
VWRQTVPDAIKDGDVRNTVESVLNDAEDVLSFFFTNSGSALRRVKTRERKKRVNAVSKEV
KSSPVTVDHTTDCTSASKTAAGCFKSPLFSSQLNNKDFTQWTPLSLSDVQDPKTNHAGVF
ETPSKLASLQQQRSSPDPSHGRCAPLDASPALTFSRKPRKFVYPVQNSESKRTHSETDAV
LGKHSQEASPCQKEDAHGDQPEEDGVKQDHPGRRNVDHDLDMSQLCKAFSEDFTQETNSF
KSPHKSAQSGVDCGSTPTCAPIEISKVQDKKELMIPLEGNFDHQAAVIPNLTHIQSLESR
VCDSGCPTVCSGFSLETRACSGAELLPSGFKTANNKIIVVPPEALQKAKASFDEFFEHTA
RKDASSPTDPANGGTKRRTPYESVLANPAGEKPLFESSHPGREAGRESDESVLRSEGAAE
SIPSTFLCQTNKSGFKTTSNKSITVSSENLEKAKYVFMELEEEKFDSRPSNKVLQVSDVK
EAQPSKFGLKNSRKPTQRPSGNDEGSSSLTASQKADVTELCSMLEEVGSQYEFTQFNHAK
IGSRRADSMQFAKEWDPEILADIDFDDSFNSELTDEQASKKHWSKADVHASVLNGGVAIS
NAAAEESGLATDTADDNLQEKSFCPGFKTAKGNAVKISERCLSKARSLFADIEDTDGNFG
LQSDGKADDDKQEKQSGDHQDDPRQTAPESESELKPRFNPCNGNGKSSTTEEAATCKQRC
SKVNLETLQRTIDEKPVLNQRNMVNLGFTTAGGKDVKISEKALRNAKKLLDEAANDQETK
SPTKTKALISGHNSFNMLADALYDSKICSGSVPKDGNEHQFENGTDITQATRSAERNGFK
TAXGKEASVSASAIQRSKTLFKDLEDRLKSSDRMKSTQENAKPDPAGDADQHALVDGFKT
ASGKEARFSEKALTKAKALFKNCYPDCVDVSQAIGVKGDDTSVMDDCGFEAGNMAQSPGT
DRLNEETLKNDSADLNKYVQRKFTKTSSETLQPPSGCGFSTSGAAVSVSAEALQRAKAMS
DDSNAASIGKRGLEISELKRISKNEDCGFSTASGRKVAVSDEALQKAKSLFTDCDVDVLG
PDLCQLPAAKTSSTGPGHIRLPFNAATNRNTAAKQKGTNERVDAFANCDRVSFDQQSERY
ISEDSSAKNKSVPFNAGKSERRNYDNMSNGGLKVVALGSRDFGFSTASGKDVHVSKAALE
VALEVFKDCDAQPLTDLQCDISNGAPGTNMNKTPVVPKIKAASPFLPPQITKDNPSHSLT
FDGCTVTQQRYFEQEAMACTKALLEDELNENGLLSILDTPTVRPETCLEVNTGTGKRTLE
DKILTGQPPSKRRHVSEFDQISEARAVCTPVKSSPNGTLKDRRVFKYNLKPNITSPFRDV
VDQTSANPDPQKKRQSDPKAPIFIPPFCKKAEQPKRIVPPAAAQIRNTFVPPIKKNNVSG
SVYVEGSTQHSDTSAITSSKCESSRNHSDEDQKAVTGTERDEILENRSAVPCETKVIWQQ
SLELARDMQNMRIRKKKRQRVRPLPGTFYLAKTSGVSRVSLKEAAGYKRPELYTEEKLYQ
HGVSIKVSQITGENAELFQFSCDDFFKREVLWESGGIQLADGGWLIPNNKGMLGKEEFYR
ALCDTPGVDPKLISEAWVYNHYRWIVWKRASMERVFPEVMGGRCLTPEQVLLQLKLRYDI
EVDHSRRSALKKIIERDDAPAKTMVLCMCGIAKCDPIPARTEEATDTADAKPVSPAAIIW
LTDGWYSIKALLDVPLSTMLRKGRLREGVKLLIHGAELIGSQDACPPLEAPDSLMLKVSA
NSTRRARWDTKLGFYKDPRPFSLLLSSLYANGGVVSCVDIIVVRSYPMQWMEKKPGSVFV
FRNERAESREAARYNSTKQKAMELLFSKIQGEIEKEEEEKNKSRKSRTFSLQAIKNLHEG
EELHEAMEIDPALMEAHLTTQQVKAVSSYRRAVTEKTRAELQDRVHKAVQEAEGGCANRD
VTPVWKLSIADSNDLHSSRVYTLNIWRPSVELLSLLREGCRYKAYHLAASETKKRSGTSN
IQFTATKKTQFQDIEVCTQWLNLHFPVRQSAKFRELQSPGFSSPCGEVDVVGYVISILDR
QGTSPVLYFVDEKFDFVSVRICSSLALLTLEDLVKPLALLAVSNLQLRQQSGPVPSLYAG
EHALFSTNPKEAHLQDNISHLKTFVENYEHFFIVAEEKLSNLIPTGFLNSPRTPGSSSAP
KTSVRNNVTPHQTNRVFSPFTPVAKRTPAPTEDSKTKDPRSVKRKRGLEYLSHLQNPAPL
LPLGMVRSPRVSKTFNPPRRREAACNPQTVATPPPENK
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgacttcttccataagatcgaactagaacttggtccactgaactcaggctgg
tttgaggagctgaccgcgagagcttctgacgatggaggtaagaacaccactcttgttgga
ggcgactcttcagcacagaaggataaaggcattttcagagctccagctaaaatgccagtg
ttggacagtcagtccatgtgttcaacacccaggatatttcggtgtagacggccacattct
cctgcgtcagggctcgaagattctcccgattcagggcttcagaacttgtttcccgttcta
ccaggcacagaatcgagcccatgcctgttcagcttagctaaagacagccagcagtttgaa
aaagactggggatcagtaaaaacaagtgaatgtaaaggtctgctagacacaccaacaggt
ttaacaacacaagccacatctgcacagcgcatctgcgagagcctcggagctcagttcaat
cctgatctgtcttggagcagttcctttaacacgccatcagcactgacccccacagtcatt
ttgtcaaaaactgaaggccagtcttcaccaattgtccgaaagctgtttccatccctctca
aaatgctcagaatcgacatctgcgagtacatctggtccgcagcacaacgatgcattaaca
gatacgaacgaccaggcagaagaacagaaatccgattcatcttccatcaacttggaaggt
gtctggaggcagacggtgccggatgcgataaaagacggtgacgttcggaacaccgtagag
agcgttcttaatgatgccgaggacgtcctgtccttcttcttcacgaacagtggctcagcc
ctgcgaagggttaaaaccagggaaaggaaaaagagggtgaacgcagtgtctaaagaagtg
aagtcgagtcccgtgacagtagatcacactacagattgtacttcagcctcaaagactgct
gctggatgttttaagtcccctttattttcaagtcagctcaataataaggatttcacccag
tggactccgctgagtctatccgatgtccaagaccccaagacaaaccacgcaggcgttttc
gaaacaccgagcaaactcgcaagtcttcagcaacagagatcctctcctgatccgtctcat
ggacgatgtgctccgttagacgcatctccagcgcttaccttctcgagaaaacccagaaag
tttgtgtatccagtgcaaaattcagaaagtaaaagaacgcacagtgaaactgatgctgtg
cttggaaaacactcccaagaagcttctccatgccaaaaagaggatgcgcacggagatcag
ccagaagaagacggcgtaaagcaggatcatcctggacgccgtaacgtggaccacgacctc
gatatgtcccagctttgtaaagcgttctctgaggatttcactcaggaaacaaactcgttc
aaatcaccacacaaaagcgcacagagcggcgtcgactgcggctcaacgccgacatgtgca
ccgatagaaataagcaaagtgcaggataaaaaagaactcatgataccacttgaaggtaat
ttcgatcatcaggcagcagtaatccccaatcttacacatatacagtctcttgagagcaga
gtatgtgacagtggctgtcctacagtttgctctggtttcagtctggaaactcgagcatgt
agtggcgccgaacttcttccttctggtttcaaaacagcaaacaataagattatcgttgtg
cctcctgaagctttacagaaagccaaagcatcgttcgacgaattctttgagcatacggct
cgcaaggacgcttcgagccccaccgatccggcaaacggcggtacgaaacggcgcacaccg
tacgaaagcgttctagcgaaccctgctggagagaaaccacttttcgaaagttctcaccct
ggacgtgaagctggaagagaaagtgatgagagcgttttaaggtctgagggagctgcagag
agcattcctagcacgttcctgtgccaaacaaacaagtccggcttcaaaaccacatcgaac
aaaagtattaccgtctcctctgagaatctggagaaagctaaatacgttttcatggagttg
gaggaagagaaatttgattcgcgtccgtcaaataaggtgttgcaggtcagcgatgtgaag
gaggctcaaccatctaaattcggcttgaaaaatagtcggaaacctacacaacgcccctcc
ggtaacgatgagggcagttcatctctgacagcttcgcaaaaagcagatgtgaccgagctg
tgcagtatgttagaggaggtgggcagccagtacgagttcacgcagtttaatcacgcaaag
atcggctcgagacgtgcagatagcatgcagtttgcgaaagagtgggatccggagatacta
gcagatatcgacttcgacgatagttttaactccgagttaactgacgagcaggcgtcaaaa
aagcattggtcaaaggcggacgtgcacgcttcggttttgaacggtggtgtggccattagc
aacgcagccgccgaggagtccggtctcgcgaccgacacggctgatgacaatctgcaagaa
aagtctttttgtcctggcttcaaaactgcaaagggaaatgctgtgaaaatctctgagaga
tgtctaagcaaggcgagaagccttttcgcagatatagaggacaccgacggaaacttcggt
ctccagagtgacggcaaagcagatgatgataaacaggaaaaacagtcaggcgaccaccaa
gatgatcctcgtcagactgctccggaatctgagtcggaactaaagccaaggttcaatcca
tgtaacggaaacggaaagagctcaacaactgaagaagccgcgacctgcaaacaaaggtgt
agcaaagtaaatctggaaacactacaaagaaccatagatgagaaaccagttttaaatcag
cgcaacatggtaaatttaggatttactactgctggtggaaaggatgtaaagatttcagaa
aaagctcttcgaaatgctaagaaacttctcgacgaagctgcgaacgaccaagaaaccaaa
tcccctacaaaaacaaaagccctgatttcaggacataattcttttaatatgttggcagat
gcgctttatgattcgaagatatgctctggatccgtgccaaaagatgggaacgagcaccaa
tttgaaaatggcactgacataacacaggccactcgatccgcagagagaaacgggtttaaa
acggcangcggcaaagaagcgtctgtctcagcaagcgcaattcagcgatcaaaaaccctt
ttcaaagatctagaagaccgcctaaaaagctcagacagaatgaaatcgacacaagagaat
gcaaaaccagaccccgcgggagacgcggaccagcacgcactcgtcgacggatttaagacg
gcaagcgggaaagaagcaagattttctgagaaggctcttacgaaagccaaggctcttttt
aaaaattgctatcctgattgcgtggatgtatctcaagcaataggagtaaaaggagacgac
acgagcgtgatggatgactgcggcttcgaggcgggaaacatggcgcaatcgcctggaacg
gaccgtctcaacgaagagactttaaagaacgactccgcagatttgaataaatatgtccaa
aggaaattcacaaaaacctcctcagagactcttcaaccaccatctggctgcggtttcagt
acaagcggcgctgcggtgtccgtttcagccgaagcacttcagagagcgaaagctatgtcg
gatgactcaaatgccgcctcaattggtaaaaggggattggaaatatcagaactaaagcgt
atttccaaaaacgaggactgtggttttagtactgcgagtggaaggaaagttgccgtttct
gacgaagctctccagaaagcaaagagtctttttactgactgtgatgtggatgtattagga
cctgatctttgtcagttgccagcagcaaagacctcttcaacaggacccggacatataaga
ttacctttcaacgccgccactaacagaaacaccgccgcgaaacaaaaggggacgaacgag
cgcgtagatgcgtttgctaattgcgatagagtttcattcgaccagcaaagtgaacgctat
attagtgaagattccagtgctaagaataaaagcgtgccatttaatgctgggaaatctgaa
cggagaaactacgacaacatgagcaatggtggtctgaaagttgttgctttgggatcaaga
gattttggtttcagcacagccagcggaaaagacgtgcacgtttcgaaagcggccctcgag
gtagcacttgaggtgttcaaagattgtgatgcacaaccacttactgatttacagtgtgat
attagcaatggtgctccaggtacaaatatgaacaaaacgcctgttgtaccaaagatcaaa
gccgctagtccgtttctcccaccacagattactaaagataacccttcccattctttaact
tttgatggatgcactgtaacccagcaaagatattttgagcaagaagcaatggcttgcact
aaagcacttttagaggatgagctcaatgagaatggtttgttgagtatcttagacactcct
actgtacgtccagagacatgcttagaggtgaacacaggaacaggaaaacggactttggag
gacaagattttgaccggtcaacctccttcgaaaagaagacacgtgtcagagtttgatcag
atctcagaagcccgagcagtctgcacgccagtgaaaagcagccccaatgggactctgaaa
gacagaagagtattcaaatataacttgaagcccaatatcacttctccattcagggatgtc
gtggatcaaacctcagccaacccagatccccaaaaaaagagacagtcagaccccaaggcc
ccaatttttatacccccattttgcaaaaaggccgagcagccaaaacgcatcgttcccccg
gccgcagcccaaattcgcaacacgtttgttccacccattaaaaagaataatgtgtcaggt
agcgtttatgttgagggttcaacacaacattctgatacctcagccatcacaagctctaaa
tgtgaaagcagcaggaatcactcagatgaggaccagaaagcagtgacgggaaccgagaga
gatgaaatccttgagaatcgcagcgctgtcccgtgtgaaacgaaagtcatttggcagcag
tctttggagttggcgcgagatatgcagaacatgaggattagaaaaaagaaacggcagaga
gttcgacctctgcctggcactttttacctggccaagacgtccggggtgagcagagtttcc
ctgaaagaggctgcaggatacaagcgtcctgagctctacacagaagaaaagctctatcag
catggcgtgtccatcaaagtgtcccagataaccggcgagaacgcagagttgtttcagttc
agctgtgatgatttttttaaacgtgaggttctctgggaatccggagggattcagctggcc
gatggaggctggctcattccaaataacaagggcatgctgggtaaagaggagttctacaga
gctttgtgtgatactcctggtgttgaccccaaactgataagcgaagcatgggtgtataac
cactatcggtggatcgtttggaaaagggcttcaatggaaagagtttttccagaagtcatg
ggcggtcgctgtctcactccagagcaggtgcttcttcagctcaaactcaggtatgatatc
gaggtggaccacagtcgaagatcagccctaaagaagatcattgagagagacgatgcacca
gccaagaccatggtgctctgtatgtgtggaattgccaaatgtgaccccattccagccagg
acagaggaggccacggacacagcagatgcaaaacctgtgtcacctgctgcaattatatgg
cttactgatggctggtattccattaaagctctgctggacgttccgctgtctaccatgctg
cgaaagggccgtctcagagagggcgtgaaacttctgatccacggtgcagagttgattggc
tctcaggatgcctgtcctcctctagaggctcccgattcactcatgctcaaggtttcagca
aacagtacaagacgagctcgctgggacaccaagctgggcttctacaaagaccctcgaccc
ttttcactcttactttcatcgttgtatgctaatggtggagtggtgagctgtgtggacatt
atagtggtgcggagttacccaatgcagtggatggagaagaaacccggttcagtgttcgtg
tttcggaacgagcgagctgaaagcagagaagcggcacgctacaacagcaccaaacaaaag
gccatggagctcctgttctccaagatacaaggcgagatcgagaaagaggaagaggaaaag
aataaatccaggaaaagcagaaccttcagcctccaagcgattaagaacctgcatgaaggg
gaggagcttcatgaagcaatggagattgatccagctttaatggaggcccatctaaccaca
cagcaggtgaaggctgtgagcagctacagacgagctgtaaccgagaagacgagagcggag
ctccaggaccgggtgcacaaggccgtacaggaggccgagggaggctgcgctaaccgagac
gttactcctgtctggaaactctcaatcgctgactccaatgatttgcacagcagccgtgta
tacacactgaacatctggcgcccctctgtggagttgctctcgttactgcgagagggctgc
agatacaaggcttaccatcttgccgcatcagagaccaagaaacgctctggcacttctaac
atccagttcacagccaccaagaaaacccagtttcaggacattgaggtctgcacacaatgg
ttaaatcttcattttcctgtgagacaatcagcaaaattcagagaacttcagagccctgga
ttcagctctccgtgtggagaggtcgacgtcgtgggatatgtaatctccatcttggacaga
caaggcacgtctcccgtgttgtattttgtggatgaaaagtttgactttgtctcagtgagg
atctgcagcagcctggctcttcttactctggaggatctggtaaagccattagctctactg
gctgtaagcaacctgcagctccgacagcagtctggcccagtccccagtctttatgctgga
gaacatgcactattctctacaaaccctaaagaagcccacttgcaggacaacatttctcat
ctgaagacatttgtcgagaattatgagcatttcttcatagtcgccgaagagaagctctcg
aacctgattccgacgggcttcctgaactccccgagaactccaggttcgtcatcggcgcca
aaaaccagcgtcagaaataacgtaacaccccatcagacgaaccgggttttctcccccttt
acaccagttgccaaaagaactcccgctcccactgaagactcgaaaaccaaggaccccagg
agtgtgaaaaggaagcgtggcttggaatacctgtcgcacctccaaaacccagcgcccctc
cttccactgggaatggtccgttctccccgagtcagcaagacctttaaccctcccaggagg
cgtgaggctgcttgtaatccccagacagttgcaactccaccaccagagaacaagtag
DBGET
integrated database retrieval system
