Silurus meridionalis (southern catfish): 124394844
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Entry
124394844 CDS
T08004
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
smeo03440
Homologous recombination
smeo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124394844 (rpa1)
03420 Nucleotide excision repair
124394844 (rpa1)
03430 Mismatch repair
124394844 (rpa1)
03440 Homologous recombination
124394844 (rpa1)
03460 Fanconi anemia pathway
124394844 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124394844 (rpa1)
03032 DNA replication proteins [BR:
smeo03032
]
124394844 (rpa1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124394844 (rpa1)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124394844 (rpa1)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124394844 (rpa1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124394844 (rpa1)
MMR (mismatch excision repair)
124394844 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
124394844 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
Por_Secre_tail
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
124394844
NCBI-ProteinID:
XP_046719283
LinkDB
All DBs
Position
12:complement(12266872..12295456)
Genome browser
AA seq
602 aa
AA seq
DB search
MAVQLSEGAIEGLIKGKEVTNPVLQLINIRKLDSGNGPVRFRLMMSDGLYTMSSFMLATP
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDLEVIKPADQVPGKIGDPTPYVEG
QSKPPQSAPAPAAPAPRLLQPQNSGSMNRGSARDFGKKPMTAPSTPGGTSKVVPIASLNP
YQSKWTIRARVTNKSAIRTWSNSRGDGKLFSIEIVDESGEIRVTGFNQEVDKFYSLIEQG
KVYYFSKGTLKIANKQFSSLKNDYEMTLNGESTIIPCDDNHDVPMVQCDFVSIADLDSRE
KDAILDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKIIQVTMWGNEAETFDGTGQ
PILAIKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQSMTEMRGG
GGGGPTNWKTLADVKNEHLGHGDKADYFTCIGTIVYMRKENCLYQACPSKDCNKKVVDQQ
NGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAETILGQKSDYIGQLKDSN
EASFDEVFQHANFSTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYCKRLIMNIRKHA
AH
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaattgtcagagggcgcaatagagggcctgatcaagggtaaagaggttaca
aacccagttcttcagttgattaatattcgaaagcttgattcgggcaatggaccagttcgc
tttcgcctgatgatgagcgatggtctttacaccatgtcctctttcatgctcgccacgccg
ctgaactcgctggctgaacaaaaccttgtagcgcccaactgcgtgtgcttgctgaagaaa
agtgtcaccaacgtccttaaggatggacgcactgtggtcattatcctggacttggaggtg
attaaacctgcagatcaggtgccagggaaaataggagacccaactccttatgtcgagggt
cagtccaagcctccacagagtgctcctgctcctgctgctcctgctccacgtctactgcag
cctcaaaactcaggctccatgaatagaggctctgctcgtgattttgggaagaagcccatg
actgcccccagcacaccaggaggcacttcaaaagtagttcctattgccagcctaaatccc
taccagtcaaaatggaccattagagcacgagtcactaacaagagcgccattcgtacctgg
agcaactctcgaggggatgggaaactcttttccattgagattgttgacgaaagtggagaa
attagagtgactgggtttaatcaggaggtggacaaattctactccctgatcgaacaggga
aaggtgtactacttctctaagggaactctgaagatcgccaacaaacagttctcgtctctt
aagaacgactacgagatgactctaaacggcgagtcgaccatcatcccttgtgacgacaac
cacgacgttcccatggtgcagtgtgactttgtctctattgccgatttggattctcgggaa
aaagacgccattctggatgtgatcggtgtgtgtaagagcgtggaggatgtgactcgtatc
acaacgaagaacagtcgtgaagtttccaagaggaatatccagctgatggacatgtctggc
aaaattatccaagtcaccatgtggggaaatgaggcagagacattcgatggcactgggcag
ccgatcttggctataaagggtgccagactctctgattttggagggcgctctctttccaca
ctctacagcagcacgctgatgattaaccctgacattcctgaggcgtacaaactgcgaggc
tggtatgataaagagggtcatgccctggatggccagtccatgacagaaatgaggggaggt
ggcggcggcggcccaactaactggaagactttggcagatgtcaaaaatgagcacctgggc
catggagacaaggctgattactttacctgcattggcaccatcgtgtacatgcggaaggag
aactgtctctatcaggcctgtcccagcaaggactgcaacaaaaaggtggtggaccagcag
aatggcatgttccgctgtgagaagtgtgacaaagagtttcctgacttcaaatatcgtctc
atgctctccgcaaatattgcagattttggagataaccagtgggtgacatgctttcaagac
agtgctgagactatcctgggccagaaatcagattacatcggccaactgaaggactcaaac
gaagcttcctttgacgaggtcttccaacatgctaatttcagcacttttgtcttccgcaac
agagtgaaattggagacctataatgatgaatctcgcatcaaggtgaccgtggtggaagcc
aagcctgtggatcacaaggaatactgcaagaggctgatcatgaacatcaggaagcacgca
gcgcattag
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