Silurus meridionalis (southern catfish): 124394918
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Entry
124394918 CDS
T08004
Symbol
grin3ba
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04020
Calcium signaling pathway
smeo04080
Neuroactive ligand-receptor interaction
smeo04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124394918 (grin3ba)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124394918 (grin3ba)
04082 Neuroactive ligand signaling
124394918 (grin3ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124394918 (grin3ba)
Ion channels [BR:
smeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
124394918 (grin3ba)
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GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
124394918
NCBI-ProteinID:
XP_046719361
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Position
12:25928649..25992457
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AA seq
1169 aa
AA seq
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MSAMLCRLVAYLSVSLHALIAPCQLHPQPCGVLAQIGHTVRLGAVLPSRQPSRVRAALAR
ALAHARNRPHAPLLPYNLSMEVVWARAAHADPESVLRCVCQDVVVRGVSAVLAFPQSRRE
LAQVDFISAFLEIPFISVIEEGEALQTQNRFHLQMLTHVPASGLAEVLLSVLVQAGWQGG
AAVMCPGGGDTEVLEHLHRRGQAGLNGSHWHLWETLDLSSYWTSSWSKEEANNNNNNRFI
LHKNPEDSSQEVVNKEQEVSELLSQLMNRTPSALHSTVVVLGSDPECVSSVLHGASRLRH
TLWVLGLPLNPDALSAVGSPKGLLAYGQTERRPLSSYISDVLQLLGRAVSDASMVRPDLA
LIQNMVNCFDKPNKHEVLSSGHYLSRYLSNASFEGLTGRVSVHPSISTVSTTHKFHIWNL
QRDALGQPSWTTVAEWHSGHLEMDKKSIWPDLMQPEMNQDLLIQPGGRWHYRLPLSGNRL
RVVTLVEHPFVFTDKADEDGRCLSGQLCLDPQTNNSDILNHLFQDLELRNSTSLPSEMIK
CCYGYCIDLLEKLAEDMRFDFELYIVGDGKYGAWKNGQWTGLVGDLLSGAADMAITSFSI
NSARSKVIDFTSPFFSTSLAIMVRSKDTAAPIGAFMWPFHWSMWVGIFITLHVTALFLTL
YEWKSPFGMTPHGQNRVRVFSYSSALNLCYAVLFGRTVASKTPKGWTGRFLMNLWAIFCL
LVLSSYTANLAAVMVGEKMFEEVSGIHDARLQHPSLGFRFGTVHESSAEDYMKKSFPEVH
EYMRHYNQPSTPQGVATLKTDPPQLDAFIMDKALLDYEVSNDAECKLLTLDKAFAIEGYG
IGFPQHSQLTQNFSKILNSYKSDGFMDLLHDKWYRLAPCGKQSFALTKTIQMGIQHFSGL
FVLLCVGFVGSLLTLLSEHTFYNFILPHLHNQHHLKYWLHTSQKIHRALNTVCEEKTTDT
KTNIPLCLSEGCKLHRLPSTDPSISSSTSINKLTSESPEALSGEPKDTNHKRVHFNLGSE
RGIRGQDVAMVRPQVGIGLSEEAACDLVELEQGSRSSDGGMKKLLRSQRGIRGLVGSPPA
QLCSNGDAASGLSLVLLPPACPEASRNALWEGELQEIEGKIKEFRGNLRAALARRAELQK
NLQKEKERQRQAERDSRRLSITTDMNRRR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgatgctctgcaggctcgtggcgtatctctccgtctccctgcacgcgctgatc
gccccgtgccagctccatcctcagccttgtggcgtcctcgcgcagatcggacacaccgtc
cgcctcggcgccgtcctgccatcgcgccagccctcgcgagtccgcgccgccctcgcccgc
gctcttgcgcacgccaggaacagaccccacgcgccgctcctgccctacaacctgagcatg
gaggtggtatgggcgcgggcagcgcacgcagacccggagtcggtgctcaggtgcgtgtgc
caggacgtggtggtgcgcggagtctctgccgtgctcgcgttcccgcagagccgccgcgag
ctcgcgcaggtggacttcatctccgccttcctggagatccccttcatcagcgtcatcgag
gaaggagaagcgctacagacgcagaaccggttccacctgcagatgttgactcatgtccct
gcgtctggattggctgaggtgcttctctcagttctggtgcaagctgggtggcagggcggg
gcagctgtgatgtgccctggtgggggtgacaccgaggtgttagaacacctccaccggcgg
ggccaagccgggctgaacggttcacactggcacctgtgggaaaccctcgacctttccagc
tactggacatcttcatggagcaaagaggaagcgaataataacaacaacaacagatttatt
ttacataaaaacccagaggattcctcacaggaagtagtcaataaggaacaggaagtaagc
gagcttctttcacagctcatgaatcgaaccccatctgccctgcactccactgtcgtggtg
ttgggatcagacccagagtgtgtgagctcagttttgcatggagcgtcacgactcagacac
acactctgggtcctgggactacctctgaacccggatgctttaagcgctgtaggttctcca
aaaggtctgctagcatacggacagacggagcgcagaccgctcagctcctacatcagtgac
gtgctgcagctgctgggccgggctgtgtctgatgccagcatggtgcgacccgacctggcg
cttatccagaacatggtcaactgcttcgacaaacccaataaacatgaggtgctgtcatct
ggacactacctgtccagatatctctctaacgcgtcctttgagggtctgaccggccgtgtc
agtgtgcatccctccatctcaacagtttccaccacccataaattccacatatggaacctt
cagagggatgctctaggtcagcccagctggaccacggtggctgaatggcattctggacac
ttggagatggataaaaagagcatttggccagatttaatgcaacctgagatgaatcaggat
ttgctcattcaaccaggaggacgttggcattacagacttcctctttctgggaacagactc
cgtgttgtgactttggtggagcatccatttgtttttaccgacaaagctgatgaagatggt
cgatgtctgtctggacagctttgtctggaccctcaaacaaacaactcagatattctgaat
catcttttccaagatctggagctgagaaacagcacatcgttaccgtctgagatgatcaaa
tgctgctatggatactgcattgatcttctggagaagcttgctgaggatatgcgatttgat
tttgagctgtacatcgttggagatggaaagtatggagcatggaaaaatggccagtggaca
ggactggtgggagacttgctgagtggagcagccgacatggccatcacgagcttcagcatc
aattcagcacggagtaaagtgatagacttcaccagcccgttcttctccaccagcctggcc
atcatggtgcgcagcaaagacacggctgcacccatcggagccttcatgtggccgttccac
tggtccatgtgggtggggatcttcatcacgctccacgtcaccgctcttttcctcacactg
tatgagtggaagagtccgtttggaatgacgccgcacggacagaaccgggttcgagttttt
tcctattcctctgcactcaacctgtgttacgccgtgctgttcggacgaaccgtcgcaagc
aagacgccgaaaggctggactgggcgattcctcatgaacctctgggccattttctgcctg
ctggtgctctccagctacacagcgaacttagcagctgtgatggtgggagagaaaatgttc
gaggaggtgtcaggaattcacgacgccaggctccagcacccgtctctggggttccgcttc
gggacggtccatgagagcagcgctgaagattacatgaagaagagttttcctgaagtgcac
gagtacatgcggcactataaccagccctccacaccacagggggtcgctacactcaagaca
gatcctcctcagctcgacgcgttcatcatggataaagctctactcgattatgaagtctct
aatgatgccgagtgtaaactgctgacactggacaaagcgttcgctatcgaaggttatggt
attggatttcctcagcattcccagttgacccaaaacttttcgaagatcctgaacagttat
aagtcggacggatttatggatctgttgcatgataaatggtatcgtctcgctccctgtgga
aaacagagttttgccctcaccaagactatacagatgggaatccagcacttctctggactt
tttgtgttgttgtgtgtcggttttgtgggttcgttactcacactgctgagtgaacacacc
ttctacaactttatcttaccacacctgcacaaccaacaccacctgaagtactggctccac
accagccagaaaattcaccgagcattaaatacagtgtgtgaggagaaaacaacagacaca
aaaacaaacattccgttgtgtctgtcagaaggctgtaaactccaccgtctgccctccact
gatccctccatctcctcctccacctccatcaacaagttgaccagcgaaagtcccgaagca
ctgagcggagaacccaaagacactaaccacaagcgtgtgcacttcaacctggggtcagag
cgaggcatcaggggccaagacgtggccatggtgaggccacaggtgggcatcgggctctca
gaggaggctgcatgtgacctggtggagttggagcagggcagtaggagttcggatggtgga
atgaagaagctgttgaggtcacagcggggtatcagggggttagtgggcagcccccctgct
cagctgtgttctaatggagatgcggcatcaggtctcagcctggttctcctgccccccgcc
tgccccgaggcatcacgcaacgctctatgggagggcgaactacaggagatagagggcaaa
atcaaagagttccgggggaacctgcgggcagcgctggcacggagagctgagctccagaag
aacctgcagaaagagaaagagagacagagacaggcagagagagacagcagacgtctctcc
attaccacagacatgaacaggaggaggtga
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