Silurus meridionalis (southern catfish): 124394920
Help
Entry
124394920 CDS
T08004
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124394920 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124394920
NCBI-ProteinID:
XP_046719367
LinkDB
All DBs
Position
2:14232791..14248954
Genome browser
AA seq
1245 aa
AA seq
DB search
MSLGSSILNSTSPSSLSVYGFQNNLSTPSSTILTSNTVNTLSGYGVQKNISQSIGSAGIV
STGVLTSTGTTTRSANDDVARKYIILEKENIPSKNDTEVLVLSKDSGKQFSSSTSYGKGG
SVSDVSLKKEAVASSYTETAPAKLTLSSYYGSSSAPTKDKATYAEIYKEKNNGKGEDGCF
GCGPSCCSWWKWLLGLLLSLLLLLGLLFGLIALAEEVRKLKERMDTLQGLVKANGGSISR
LTDHNIPNQIPGLYMDMGTSDNALNVGANTISDSAKLQRLLQTELQSEKFRASLASSLKG
ERGIPGPKGDTGAQGTKGDSGFPGMPGSPGVTGHPGPEGPKGQKGSPGEHGAEGLPGLRG
RDGSPGQRGEPGSAGIGEKGERGSSGEPGTRGPPGPAGPPGPKGSAGVNGLSGLPGEPGP
QGFRGEAGPAGPKGDRGPHGQPGIKGDHGEKGDPGVPGFPGAPGKTGLHGEKGDKGATGA
SGADGEKGQRGDQGPIGMPGIRGPAGPPGDTGPQGAQGLQGPPGIAGLPGQPGVKGENGE
PGRVINAAGSSSVAIPGPPGPAGPPGTAGPPGLSGPVGPAGIPGQPGPKGDKGEQGEAGV
TVERSEKVTSVRGERNYGSLDAPQVIQGPPGPPGPPGHPGAPGYGTPGPRGEKGVKGEPG
SFVPNSGTFFAGPPGPPGPAGPKGDTGPQGPRGYQGNAGQPGLPGRPGASEVRFSEQSGV
QGPPGLPGPPGPPGQQGAKGDSGIPGAPGIPGTSRGSGSVGVPGSPGSPGLPGPPGPPGS
PGHSGSTADYRRFIVDYMQSDSMRQHLSGFQGPPGPPGASVSVEEVASRVIAYIQRSGLS
GSPGPQGPPGPAGSVSVSANEIIALLQRDDVRRYVIGPPGPPGPSGSVNLANFDTQEVAN
YVLRIMNERGLINRPGPPGPPGPPGQPGSTYSDITALIERSGLRTGLQGPPGPPGRPGLP
GPVGPAGTPGFSSSGYRLEDIQSYIQNSGLQGAPGPPGPPGPQGPAGDSRALASYDRANQ
RAHIRAELQEYLNSDTMRRYTSGLPGPPGPPGPRGEKGNCGDSTYSAGGGYYATDRNGVR
LAEADYSNVALRVTDYIQRQGLLQKLMIIIGDLILWESRALQVLLVHLAILDTAVFLLLM
GMSLQISWISLEYMALFQVHLAGKDIKEKEDTLDLKEKKGRWEDKAYLVFQDQQVQRGQG
DKRVRKVKSRLVAGGGVLACKSLTFVLFIKTLSLHGGFQVYSEAV
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgtcactaggatcttctattttaaactccacatcaccttcttcattgtcagtgtatggc
tttcagaataatctttccacaccatctagtacaattcttacatcaaacacagttaacaca
ctttcaggatatggtgtgcagaaaaacatttctcagagcattggtagtgctggaattgtt
agtacaggagtcttaacatctacaggcacaactacgcgctctgctaatgatgatgtggca
cgaaaatatattatactagagaaggagaatattccttcaaaaaatgacacagaagtgctc
gtgctttcaaaggacagtggaaagcagttctccagcagtacatcgtatggaaaaggaggg
tctgtttcggatgtctcactgaagaaagaggcagtggcaagcagctatactgagacagct
cctgccaaattaactttaagctcctactatggatcttcatcagctcctactaaagataag
gctacatatgcagagatctataaggagaagaataatggcaaaggagaagacggatgcttt
ggctgtggtcccagttgctgctcgtggtggaagtggctgcttggactcctgcttagtctt
ctgctgctccttggactcctttttggacttattgctctcgcggaggaggtgaggaagctg
aaagagcgtatggatactcttcagggcctagttaaggccaacgggggtagcattagtcga
ctcactgatcataatattcccaaccaaataccaggtttatacatggacatgggtacttct
gataatgcattgaacgtaggagctaatactatctcagattctgcgaaactgcagagactc
ctgcaaaccgagctgcagtctgagaaattccgagcaagccttgcttcatcactcaaagga
gaaagaggaattccagggcctaaaggtgatactggagctcaaggaaccaaaggggatagt
ggtttcccagggatgccaggttctccaggagttacaggacacccaggacctgaaggtcca
aaaggacaaaaaggaagtccaggcgagcatggtgcagaggggctaccaggactcaggggc
cgagatgggtcacctgggcaacggggagagccaggatctgcaggcattggagaaaagggt
gaaagaggctcatcaggggaaccaggaactcgtggacctcctggcccagctggtccaccg
ggtccaaaaggttcagcaggtgttaatggtctttcaggcttacctggtgaaccaggtcca
caaggtttcagaggagaagcaggccctgcaggacctaagggggacagaggacctcatgga
caaccaggaattaagggtgatcatggtgaaaagggggatcctggtgtaccaggcttccca
ggggccccaggaaaaacaggactccatggtgagaaaggagacaaaggagcaacaggggct
tcaggtgcagatggtgaaaagggtcaaagaggtgatcaaggtcctatcgggatgcccgga
atcagaggcccagctggaccacctggtgatactggacctcaaggagctcaagggcttcag
ggacctccaggcattgcaggacttccaggacaacctggagttaaaggtgaaaatggtgaa
cctggcagagttatcaatgcagcaggttccagttctgtggcaattcctggacctccaggg
ccagctggaccacctggaactgctggaccaccaggactgtcaggccctgttggtcctgct
ggaattcctggccaaccaggtcctaaaggtgataagggtgagcaaggagaggcgggggtc
acagtggaaagatcagagaaagttacttcagttagaggagaaagaaactatggctcttta
gatgcgcctcaagttattcagggaccaccagggccacctggtcccccgggacatcctgga
gctccaggatatggcacacctggcccaagaggtgagaaaggagtgaagggagagccaggg
agctttgtgcccaactcaggaacattttttgctgggccaccaggaccacccggacctgca
ggtcctaaaggagacacaggaccacaaggacctagaggataccaaggaaatgcaggtcag
cctggcctacctggaagacctggcgcatctgaagtcagattctcagagcaaagtggagtt
caaggtccacctgggctacctggacctccagggccaccaggtcaacagggtgctaaagga
gacagtggaattcctggtgctccagggatcccaggaacatcaagaggctcaggttctgtt
ggagttccagggtccccagggtccccaggactaccaggacctcctggaccacctggctct
cctggacattctggatctactgcagattatcgtcgtttcattgttgactacatgcagagt
gacagcatgaggcagcatttgtctggtttccaagggcctcctggtcctccaggggcatca
gtgtctgttgaggaggtggcatctcgagttattgcatacattcagcgctctggattaagt
ggatcccctggtcctcaaggtcctccaggccctgctggctctgtatctgtatctgctaat
gaaattattgcgttattacaaagagatgatgttaggcggtatgtgattggccctccagga
ccacctggcccttcaggaagtgtaaatctagccaactttgacacacaggaagtggcaaac
tatgttctgagaatcatgaatgaacgagggttgataaatagacctggaccccctggtcct
cctggcccacctggacaaccaggctccacttacagtgacatcactgctttgattgagagg
tcagggcttagaacaggtcttcaaggacctcccggtcctccaggaagaccaggcctacct
ggtccagttggtcctgccggaaccccaggcttttcaagctcaggatacagacttgaagac
atccagtcctacatacaaaattctggtttacagggagccccaggaccccctggccctcca
ggacctcaggggcctgcaggagactctagggcacttgcatcctatgacagagccaatcag
agagcacacattcgtgctgagcttcaggagtatctcaatagtgacactatgcgaaggtac
acctcaggcctccctggaccccctggccctccaggacctcgtggtgaaaaaggaaactgt
ggtgattctacatacagtgcgggtgggggttactatgctactgaccgtaatggagtcagg
ttggctgaggcagactactccaatgttgcactgagagtgactgactacattcagaggcag
ggtctactgcagaaattaatgataattattggagatctcattctatgggaatccagggcc
ctccaggtcctcctggtccacctggccatcctggacacagccgtgtttttgctgcttatg
ggaatgtcactacagatctcatggatttctttagagtacatggcactattccaggtccac
ctggcaggcaaggacataaaggagaaagaggataccctggacctaaaggagaaaaagggg
aggtgggaagacaaggcatatctggtattccaggaccaacaggtccagaggggccaaggg
gacaaaagggtgagaaaggtgaaatccagattggtcgccggaggaggagtcttggcgtgt
aaaagcttaacttttgttttgttcatcaaaaccctctctcttcatggtggctttcaggta
tatagtgaagcagtctag
DBGET
integrated database retrieval system
