Silurus meridionalis (southern catfish): 124394953
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Entry
124394953 CDS
T08004
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124394953 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124394953 (scarf1)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Phagocytosis
Scavenger receptors
124394953 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
124394953
NCBI-ProteinID:
XP_046719420
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Position
12:16485137..16492723
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AA seq
889 aa
AA seq
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MEWLNIVGLLFLCSPASSQKLSSTGRNVCLSPRDSALVCCLGWAQQGDECTIPLCEGQNA
CMQNEVCVYPRECRCNPGFFGFQCKTPCPSEFWGSDCRKPCLCHPNGHCDPVTGKCKCLP
THWGNICQNSCKCGRHGRCDPVSGNCTCDEGWWGSTCTKLCHCLPSTSSCDPGTGLCICK
EGYWGQTCRRHCNCLTSPCEQVSGECQCKHGLWGPSCNRQCVCNFSHSKCDPRTGTCVCQ
PGYKNPTCNEQCDVGYYGSGCLESCGHCEGGKPCSKLDGSCSSCAPGWIGTRCDQPCPSG
YHGIKCQEVCPHCRRGEPCDSITGMCAQCDPGWTGPRCDQLCPNGTFGAGCHFLCSPCYH
GRCDHVTGSCLCQPGFQSASCNSSCPDKMYGINCSLACDCGGDTCHPASGECPSSIRAGL
LAGLLIPLLVLILALLFCCCCCGSPADGKDRVAVGDGSKTNRMKHHVYTVLANMSSAMPC
LFLRSSGLPRVTVSHHDPELTFNHSFIEPPSGWVSDSFETDEDGEAVYCVPPREDIPAVA
GGELQFQEMGSKCNFLSEPPTFSSEDMSLAFGIPRTSSIAKSKRPSVSFAEGTKFSPKER
RGSTQELGRKPKTPWGVLMFSSLHGAQGSHEQTAVDKEETSDEVQTSSEDQESNFLTEAD
SERYESIPSRAYLTVPGSRRHTPSNPKKSLQSQPSSEVYEMDSGTEKVSTVYVTVGKPMR
ASKADLSSEGPVQAMLRRLGSIQRQREETAQPKSKGAAQTKPPRRKLGARASLWEQAEVS
GQPDVVLRKPSRRKHTSHSSPCTVGATELVQDNTTPKRPLSSILKCVPGSTTQVLLGDMD
PRTASESETNTEAIYETVADEVSTSSEVIHNGTVQNKESNYENVYINHS
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggaatggctgaacattgtgggactgctcttcctctgctctccggcctcctctcagaag
ctctcatcgacaggaaggaatgtttgcctcagcccacgggactcggctcttgtgtgttgt
ttaggatgggcccagcagggtgatgagtgcacaataccgctctgtgaaggacagaacgcc
tgcatgcagaatgaggtgtgtgtgtatcccagagagtgcagatgcaatccagggttcttt
ggattccaatgcaaaactccctgtccttctgagttctggggctcagactgtcgtaagcca
tgcttgtgtcaccctaatggccattgcgaccctgttactggtaagtgcaaatgccttcct
acccactggggcaacatatgccagaatagctgtaaatgtggacgtcacggccgctgtgac
cctgtcagtggtaactgcacttgtgatgaaggctggtggggttccacctgcaccaagttg
tgccactgccttcccagcacctccagctgtgaccctggtacaggcctttgtatctgcaaa
gagggttattggggtcagacgtgccgcaggcactgcaactgcttaacatcaccttgcgag
caagtctcaggtgagtgtcagtgcaaacatggcttgtggggacccagctgtaaccgacaa
tgcgtctgcaactttagccacagcaagtgtgacccccgcacaggaacgtgtgtctgccag
ccaggttacaagaaccctacctgtaatgagcagtgcgacgtgggatactatggcagcggc
tgcttggagagctgtggacattgtgaaggaggcaaaccatgctctaaactggatggctca
tgcagctcctgcgccccgggatggatcggcacacgatgtgatcagccctgtccatctggt
taccatggcattaagtgccaggaggtgtgtcctcactgcaggaggggtgaaccatgtgat
tccataacaggaatgtgtgcacagtgtgaccctggctggactggacccagatgtgaccag
ctttgtcctaatggtacttttggggccggctgtcatttcctctgcagtccttgctatcat
ggtcgctgtgatcatgtgacaggaagctgtctttgccaacctggctttcagagtgcgagt
tgtaacagttcatgtccagataagatgtatggaataaactgctcattggcctgtgactgt
ggaggtgatacatgtcatcctgccagtggagaatgtccctccagcattcgggcagggctt
ctagcaggacttctaattcctctgctggttctcatacttgccttgttgttttgctgctgc
tgttgtggaagtccagctgatgggaaggacagagtggcagtaggggatgggagtaagacg
aaccgaatgaagcatcatgtctacacagtgctagccaacatgagctcagccatgccatgt
ctctttcttaggtcctctggacttcctagggttacagtttctcaccatgatccagagctc
acctttaaccacagcttcatcgagcccccttcaggctgggtctcagactcttttgagact
gatgaggatggagaagctgtctactgtgttcctcccagagaagacattccagctgtggca
ggaggagaacttcagtttcaggaaatgggttcaaagtgtaacttcttatccgagccacca
acgttcagcagcgaggacatgtcactggctttcggcataccaaggacctcaagcattgcc
aaatccaaacggccatctgtttcttttgcagaaggcaccaagttcagcccgaaagagcgc
cgtggctcgactcaggagcttggtcgcaaacccaaaactccatggggagtcctgatgttc
tccagcctgcatggggcacaggggagccacgagcagactgcagtagataaagaagagaca
agtgatgaggttcaaacatcctcagaggaccaagaatctaacttcttaacagaggcagac
tcagagaggtatgagtctatcccatcaagggcttatttaactgtaccaggtagtaggcgg
cacactccgtccaaccctaagaagagcctacaatcgcagccctcgtctgaggtgtatgag
atggattcagggacagagaaggtgtccacggtctatgtaactgtaggcaagcctatgcgg
gcatccaaggcagacttaagctctgaggggccagtgcaggccatgctacgcaggctgggc
agcatccaaagacagagagaggaaacagcacagcccaaaagtaagggggctgcccagaca
aaacccccacgcaggaaactgggggcacgtgccagcttgtgggagcaggcagaagtttca
ggacagccagatgttgtactgaggaaacccagccgtagaaaacacacctcccatagctcg
ccatgtacagtaggggctactgaattggtacaggacaacaccacccccaagagaccactg
tcctctatacttaagtgtgtcccaggaagcactacacaagtcttattaggggacatggac
ccaagaactgcctctgaatcagaaactaacactgaagctatctatgagactgtggcagat
gaggtatctacttcatcagaggttatccataatggcacagtgcagaataaagagtccaac
tatgaaaatgtttatataaatcattcttga
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