Silurus meridionalis (southern catfish): 124394986
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Entry
124394986 CDS
T08004
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124394986 (npas1)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124394986 (npas1)
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
124394986
NCBI-ProteinID:
XP_046719472
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Position
12:16287716..16323124
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AA seq
800 aa
AA seq
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MAAMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRHFASQGDPPWSPLLEGDNNCNKDLLKPAEVM
FRRISSTGIYVADFPVSLKLHHPSIILSVRRNSHSLATDIFEQHLGAHLLQSLDGFVFVV
SQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADHVEMAERLGIKPHLRTEAGCQTA
QESASSSASTSSLAGTPEPAPSSPLSSGDEPVERGFFVRMKSTLTKRGLHVKSSGYKVIH
VTGRIRCRPALVPGSSRSLHRPMGLVSLAHTLPPSTLNEVRMESHMFVFRVNMDLQITYC
ENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQSHEDLLRKGQVVTGYYRWLQRRGGYL
WVQSCATVSINHKAPHERNVIWVNYILSRTEMPDMPLDLIQLPETLKAERLRASSSTREI
SPKTHGPNGAHSTKGGVGRNESERKGRDSYTANQSDNRRKRPHHSSPENTPPQTRRLEVF
RHREDSLSGSSDSASDSEAEEEEEEDKEEEWEHNGNSKRLKTDAGSSKKNSETGKVRNGR
AVIQQLKSVVTSTASSNIKTEQEMLGAGVCSATGGRWSNAQSTRGINGSSPSSQDSESVN
TEAPAKGLFSPPSPLSASPLPREDRLLHGSRTSDYELLQRLAAGGAAGRVLFHPLALGPP
GPQSLYAPSTIRYAPPELPTAHAEGPRLDHAPKSPTFFPHLQRIAALPPFSGFSPSETPF
ASSLTFCMNGLRGAAGTDED
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatgccattcgtcagtgagggaaagtgtgttagtgtggagtgggactttctg
caaggactcctcgccaaaccacccaccctgccctgtttacaaaacctgcggaaggagaag
tcccgtaatgcggctcgctctcgccgtgggaaagaaaactttgagtttttcgagctggcc
aaaatgctgcctctccctggtgccatcaccagccagctggacaaggcctcggtcatccgc
ctgaccatcagctacctgcacatgaggcattttgccagtcagggagacccgccctggagc
cccctgctggagggggacaataactgcaacaaggacctgctcaaaccagccgaagtcatg
ttcagacgcatttcatccactggcatctatgtagctgatttccctgtcagtctgaaactc
catcatccatccatcatcctcagtgtgcggagaaacagtcactcactagccactgatata
ttcgagcagcacctgggagcacatctattacagtccctggatgggtttgtgtttgtggtt
agtcaagaaggccgtttcctctacatttcagagacagtgtcgatctacctgggcctctca
caggtggaattaacaggcagtagtgtatttgactacattcatcctgctgaccatgtggag
atggcagagcgattgggaattaagccacacctccgcacagaggcaggctgtcagactgcc
caagaaagtgcttcaagttctgcgtctacatcctcactggctggcacacctgaaccagcc
ccctcaagtccgctgtcatccggagatgaaccagtagagcgaggtttctttgtccggatg
aaatccacccttactaagcgtggcctacatgttaaatcctctgggtataaagtgatccac
gttactggtcggattcgctgtcggccagccctggttccaggttcttcacgttcactccat
cggccaatgggattggtctctcttgctcacacactcccgccctccacgcttaatgaggtg
cgcatggagagtcacatgttcgtgtttcgtgtcaacatggatctccagatcacctattgt
gagaacaggatctcagaatatatggacctgagcccagctgaggtggtgggacacacctgc
taccacttcatccatgtggaagatcttgacaacatccggcaaagccacgaagacttgctg
aggaagggtcaggttgtgactggttactaccgctggctgcagaggagaggcgggtatttg
tgggttcagtcatgtgccactgtgtccatcaaccacaaagcaccccatgagcgcaacgtc
atctgggtcaactacatactcagtcggacagaaatgcctgacatgccactggacttaatt
caacttccagaaaccctgaaagctgagcgtcttcgggcaagctcctccactcgagagatc
tctccaaagacacatggcccaaacggtgcccactcaacgaagggtggagttggacgaaat
gagtctgaacgcaaagggagagactcttacactgctaaccaatcagataacaggagaaag
aggcctcaccactccagccctgaaaacacacctccacaaacaaggagactcgaggtgttt
cggcatagagaggacagcctgtcaggctcctctgactctgccagtgacagtgaagctgaa
gaagaggaagaggaggataaggaagaggaatgggagcacaatggcaacagcaagagactg
aagacggatgctggatcctctaagaaaaatagtgagacggggaaagtccgtaatggccgc
gctgtaatccagcagcttaagagcgtggtcaccagcactgccagctctaacattaaaact
gaacaggagatgttaggtgctggagtttgttcagccactggcggacgatggagcaacgct
cagtccaccaggggtattaacggcagcagcccctcatcccaagattccgagtcagtcaac
acagaagctccagctaagggtcttttcagccctccctcacccctctcagcttcacccctg
cccagggaagatcgtttactccacggaagccgcacgtctgattacgagcttctccagaga
ctagctgcaggcggagcagctgggcgtgtactgttccaccctctcgctcttggacctcca
gggcctcagagcctttatgctccaagcaccatacgctacgcccctccggagctgcccact
gcccatgcggaagggccccgcctggatcacgcacccaaatcacccactttctttccacat
ctgcagagaattgccgctctaccacccttcagcggcttctctccttcagagactcccttt
gcttcatcccttaccttctgcatgaacggactgagaggagccgcagggacagacgaggac
tga
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