Silurus meridionalis (southern catfish): 124394994
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Entry
124394994 CDS
T08004
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124394994 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124394994 (lrfn1)
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
SALM family
124394994 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
124394994 (lrfn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
Ig_3
I-set
LRR_1
fn3
ig
Ig_2
LRR_9
Ig_DSCAM-DSCAML_C
PRIMA1
Sp38
C2-set_3
Motif
Other DBs
NCBI-GeneID:
124394994
NCBI-ProteinID:
XP_046719480
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Position
12:1151898..1255582
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AA seq
744 aa
AA seq
DB search
MERFVLCMMLLGVVVRGQQCPGRCICQTISPTLTLLCAKTGLLFVPHTIDRKTVELRLTD
NFITAVRRKDFLNMTSLVHLTLSRNTISQIAPHAFVGLKALRALHMNGNRLTDIKNDQLK
GLVNLRHLILGNNQIHHIDPSAFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDPKGSTSSSKLTVSFG
GNPLHCNCELLWLRRLTRKDDLETCASPEHLMDKYFWSIQEEEFICEPPLIIKHHSTKPY
VMEGQGVTLKCKAMGDPDPTIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNC
VASNAAGIATAAVDINMIPLPLFVNNTGHMKEADPGLSDITTSTKSGSNDTKHQDKRVVV
DELTSNSAMIHWPSERHIPGIRMYQIQYNSTMDDTLVYRMIPSESKTFRINDLAAGRDYE
LCVLAVYDDGITSLTATRVVGCVHFRTAPETGQCQFAQAQFLGGTMIIIIGGVIVASVLV
FIVILMIRYKAYGTADPSKFKGGMSGSIHQSGRTTSKKQERAGESPMGTDCHAIALLSLE
NETQEEAKALTPLVNSEVAALALAPAPPIPPSRRASLGAPPSDDTQTDSSLTGSTMSLCP
MGTSTSDRDRKRTPAAIGLLPGELARARHRFSFDGDYTLFQSHSYPRRARARRHKSSSQL
DVSPPTERRITFSSSTEWMLESTV
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagcggttcgttttgtgcatgatgctgctgggggttgtggtgcgaggacagcagtgc
ccaggccgatgtatctgccagaccatctcgcccacactgaccttgctttgtgccaagact
ggactcctgtttgtgccacacactattgaccgcaagaccgtagagttgaggctcacggac
aacttcattacggccgtccgtaggaaggactttttaaacatgacaagcttggtgcacctg
acactgtctcgcaataccataagccagatcgcacctcatgcctttgttggacttaaagca
ttacgggcactccacatgaatggaaaccgactaaccgatataaagaatgaccagctgaaa
ggtttggtcaaccttcggcatttaatactggggaacaaccagatccaccatattgaccct
tccgcctttgacgagtttgtatctacaatcgaggatttggatttgtcttataacaacctg
aggacgttgccgtgggaggcgatagccaggatgaccaacatcaacacactaactttggat
cacaatcttatcgatcacataggagctggaactttcacactgctcactaaactggtgcgc
ttggacatgacatccaaccgtttgcaaaagctgccaccggactccctcttccagcatgct
caagtgctgtctgatccgaagggttccactagttcctccaagctgacagtaagttttggt
ggtaaccctctccactgtaactgtgagctgttgtggttacgcagactcactcgaaaggat
gacctggagacttgcgcctcacccgagcatcttatggacaagtacttctggtctattcag
gaggaggagttcatctgtgaacctccactcatcatcaagcaccactccactaagccgtat
gtaatggaaggccaaggtgtcacgctcaagtgcaaggcaatgggggatccagatcctacc
attcactggcgatttccagacggaaagctggtccataataactcgcgtaccatcctgtat
gataatggcactctggacatcctgatcaccaccctgaaagacagcggggcgttcaactgc
gtcgcctccaatgctgccggaatcgccacggcagccgtcgacattaacatgatcccactg
cccttgttcgtcaacaacaccggtcacatgaaagaggctgacccgggtctgtccgacatc
accacctccaccaaatcaggcagcaatgacaccaagcatcaggacaagagggtggtggtg
gatgagttgacctccaactcggcgatgatccactggccttcggagcggcacattcctggg
ataaggatgtatcagatccagtataacagcactatggatgacactctggtctacaggatg
attccctcagagagcaagacgttccggatcaacgacctggcggcgggacgcgattatgag
ttgtgtgtccttgccgtgtatgatgacggcatcacgtccctcactgccacacgtgtggtg
ggctgcgtccacttccggaccgctcccgagaccggacagtgtcagtttgctcaagcgcag
ttcctgggtggcaccatgattatcatcatcggtggagtcatcgtggcctctgtgctcgtt
ttcattgtcatcctgatgattcgatacaaggcgtacggtacggccgacccctccaagttc
aaaggcggaatgtctggaagcatccaccagtcgggtcggaccacatcgaagaaacaagag
cgtgcaggagaatctccaatgggtacagactgccatgctatcgcactacttagcctcgag
aatgagactcaggaggaagcaaaggcgctgacgcctctggttaactccgaggtggcggct
ttggctctcgcacctgcaccacccattcctccatcccgccgggcgagtttaggagccccg
ccatcagacgatacgcagacggacagcagcctgacaggctccaccatgtcactttgtccc
atgggcaccagcacgagcgatagggacaggaagcggacaccggcagccattgggttgctg
cccggtgagcttgcaagggcgaggcatcgcttctcctttgacggggactacacgctcttc
cagagccacagctacccgagacgggcccgcgcccgccgtcacaaatccagctcgcagctc
gacgtctcgcctccgaccgaacgccgcatcacgttcagcagcagcactgagtggatgctc
gagagcaccgtgtga
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