Silurus meridionalis (southern catfish): 124395009
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Entry
124395009 CDS
T08004
Symbol
rxrga
Name
(RefSeq) retinoic acid receptor RXR-gamma-A
KO
K08524
retinoid X receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03320
PPAR signaling pathway
smeo04148
Efferocytosis
smeo04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124395009 (rxrga)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
124395009 (rxrga)
03320 PPAR signaling pathway
124395009 (rxrga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124395009 (rxrga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124395009 (rxrga)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
124395009 (rxrga)
Nuclear receptors [BR:
smeo03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
124395009 (rxrga)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
124395009
NCBI-ProteinID:
XP_046719510
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Position
12:complement(17853063..17867328)
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AA seq
431 aa
AA seq
DB search
MDHTEYLHLSSSVQVDHSHLRPPSHAPIGSMVTHLHPSVISGITSPYSVITSSSSLSSTT
SSLPSPHNMGFSPQINSLEASRDIKPPANISSSYQCVSPGSLSKHLCSICGDRSSGKHYG
VYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE
RQRGRDKNDNEVDSSSGLNEEMPVEKILDAELSVEPKTDTYIQTNADNSTNDPVTNICQA
ADKQLFTLVEWAKRIPQFSQLPLDDQVILLRAGWNELLIASFSHRSVSVKDGIVLGTGLH
VHRNSAHTAGVGSIFDRVLSELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSSPTEVEA
LREKVYAALESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQIT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggatcatacagaataccttcatctgagttcttcggtacaggttgaccacagtcaccta
aggccaccctcccatgcacctatcggctccatggtaacacacctccacccgtctgtcata
agcggtattacatcaccctactctgtcatcacctcgtcctcatcgctgagctcaactact
tcatccctgcccagtccacataacatgggcttcagtcctcagataaacagtctggaagcc
tcaagagacattaagcctcctgctaatatcagtagcagctaccagtgcgtcagtccaggc
tctctttcgaaacacctgtgctccatctgtggtgatcgctcttctggtaaacactatgga
gtatacagctgtgaaggctgcaagggtttcttcaaaagaactgtccggaaagatctgaca
tacacatgccgggacagtaaggagtgcttaatagataagcgccagagaaatcggtgtcag
tactgccgctatcagaaatgcttggcaatgggaatgaagcgggaagctgtgcaggaagaa
aggcaacggggtcgagataaaaatgacaacgaggttgattccagcagtggtttaaatgaa
gaaatgccagtggagaagattttagatgctgaattatctgtggagccaaaaacagacacc
tacattcagactaatgcagacaactcaacaaacgatcctgtcaccaacatctgccaggca
gctgataaacagctcttcaccctggtggagtgggcaaaacgcatcccacaattttctcag
ctacctctggatgatcaggtcatcctcctacgagcaggttggaatgagctgctcatcgca
tcattctctcatcgctctgtgtcagtgaaggatggtattgtgttaggcaccgggctgcat
gtccaccgcaatagcgctcacactgcaggagtggggtccatctttgacagggttctttct
gaactggtctctaaaatgaaagacatgcagatggacaagacggagctcggctgcctcaga
gccatcgttctcttcaacccagatgccaaaggtttatccagtccaactgaagtagaggca
ctgagggaaaaagtttatgctgcactggagtcatataccaaacacaaatatccagaccag
cctggcaggtttgcgaagcttttgctgcgtcttccggctcttcgctccatcggtctcaag
tgcctcgagcatcttttctttttcaagctcatcggcgacacaccgatagacacattcctc
atggagatgctggaagcgccacaccaaatcacgtga
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