Silurus meridionalis (southern catfish): 124395097
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Entry
124395097 CDS
T08004
Symbol
si:ch211-11n16.2
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger FYVE domain-containing protein 1
KO
K17603
zinc finger FYVE domain-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124395097 (si:ch211-11n16.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124395097 (si:ch211-11n16.2)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124395097 (si:ch211-11n16.2)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124395097 (si:ch211-11n16.2)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124395097 (si:ch211-11n16.2)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Other autophagy associated proteins
Others
124395097 (si:ch211-11n16.2)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
124395097 (si:ch211-11n16.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
Baculo_IE-1
AIG1
Ribosomal_L40e
Motif
Other DBs
NCBI-GeneID:
124395097
NCBI-ProteinID:
XP_046719659
LinkDB
All DBs
Position
12:complement(4066457..4077521)
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AA seq
653 aa
AA seq
DB search
MSEMLLKEMEEVSLGQPKEEEEEECTRSFLLIDENESLQVDDEGHFLRKLGCSTSEGVKV
LTIFGNTGDGKSHTLNHVLFEGEEMFATSPSPASCTIGVWAAYEPRLGLIVLDTEGLLGA
STHQNQRMRLLLKVLAVSDVALYRTRAERLHNDMFHFLGSASAAYLKYFTPQLRALSSRC
GLNVPLSNLGPAVVVFQETSRTQLLGHDTTVPADIVLQKRFHDLGLGTEAFSSVQYVGTQ
TITPPTDFSQLREIIIKQVKSTASRAPRQPDIVFSALQALSDRFXWEIPDERISMYSFFP
DEYFTCPSVCLSCNIRCKNGMNHQKDRVPHMADGLCQYAHQYNNKVLICKKCYEGGREVI
VVPKTSASTDNPWFGLAKYAWSGYVLECPYCGIIYRSRQYWMGNQDPESTVVRTEVKHVW
QGSEAFQADHQNAAQRVLDGVNFVLQSVSEYSSGPTKAVTAWITDQVAPPYWRPNAEITE
CHGCKRVFKEAERKHHCRACGEGFCQACSNHSMPVPERGWGKNPVRVCDACHQQGGSPQT
IQAVAQAEPKALVARKMTEMAQSTLNVVSSAVDYPLCFVKGVARPDYWVPDHEITQCNRC
TKTFSSSVPKHHCRACGQGVCGVCSAQCRPVPSRGWDHPVRVCDACAARLDSE
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagatgctactgaaggagatggaagaagtgtcgctcggccagccgaaggaggaa
gaagaggaagagtgcacaaggagttttcttctcatcgatgaaaacgaaagtctgcaggtg
gacgatgaaggccacttcctcaggaaactgggctgcagcacgtcagaaggcgtcaaggtg
ctcaccatcttcgggaacaccggcgacggcaaatcgcacacgcttaaccacgtgctgttc
gagggcgaggaaatgttcgccacgtctccttctcctgcctcgtgcacaatcggggtgtgg
gcagcgtatgagcctcgcctgggcctgattgtgctggacaccgagggtcttctcggcgca
tccacgcaccagaaccagagaatgcggctgctgttgaaagtgctggctgtgtcggacgta
gccctgtaccgcacacgggccgagcgcctgcacaacgacatgtttcatttcttaggaagt
gcttcggccgcgtatctgaagtacttcacacctcagctgcgtgctctgtccagccgatgc
gggctcaatgtacccctctctaacctcgggccggcggtggtggtattccaggagacatca
cgcactcagctgctgggtcacgataccacggtcccggcagatattgtgcttcagaaacga
ttccatgacttgggcctgggcactgaagccttcagctccgtgcagtacgtgggtacgcag
accatcacacccccaacagacttctctcagttgagggagatcatcatcaagcaggttaag
agcacggcgtcgcgagccccacgccagccagacatcgtctttagtgccctacaggccttg
agcgatcgattcntgtgggaaatcccggatgaaagaatcagcatgtactccttctttcct
gacgagtatttcacctgtccgtccgtctgcctcagctgcaacattcgttgcaagaacggc
atgaatcaccagaaagaccgagtgccacacatggcagacggattgtgccaatacgcacat
cagtacaacaacaaggttctcatatgcaagaaatgctatgagggcggaagggaagtgatc
gtcgtgcccaaaacctcagcctccactgataacccgtggtttggtctggcaaagtatgcc
tggtccgggtatgtgctggagtgtccgtactgtggcatcatctaccggagcaggcagtac
tggatggggaatcaagaccccgagagcaccgttgtgcgcaccgaagtcaagcacgtctgg
caggggtcggaagctttccaggccgaccatcagaacgcggctcagcgagtgctagatggg
gttaacttcgtcctccagtcggtgtctgagtacagctcgggtcctaccaaagcggtcaca
gcctggatcacagatcaggtggctccgccatattggagacctaatgctgaaattacagaa
tgccatggctgtaagcgggtgttcaaggaggcggagaggaaacaccactgccgtgcttgc
ggcgaaggattctgtcaggcctgctccaaccacagcatgcccgtccctgagagaggctgg
ggcaagaacccggtgcgagtttgtgacgcctgccaccagcaaggaggatctccacaaacc
attcaggccgttgcgcaggcggagcccaaggcactcgtggcccgcaagatgaccgagatg
gcgcagtctactttgaacgttgtctccagtgcagtagattaccctctctgtttcgtaaag
ggcgtggcgcgacccgactactgggttccggaccacgagatcacccagtgcaatcggtgt
accaagacgttcagctccagcgtgcccaagcaccactgccgcgcatgtggccagggggta
tgcggggtctgctcagcccagtgccggcccgtgccctctcgcggctgggaccatccggtg
agggtgtgcgatgcctgtgccgctcggttggactccgagtga
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