KEGG   Silurus meridionalis (southern catfish): 124395444
Entry
124395444         CDS       T08004                                 
Symbol
gabpb1
Name
(RefSeq) GA-binding protein subunit beta-1 isoform X1
  KO
K09454  GA-binding protein transcription factor, beta
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:smeo03000]
    124395444 (gabpb1)
   03029 Mitochondrial biogenesis [BR:smeo03029]
    124395444 (gabpb1)
Transcription factors [BR:smeo03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   RHR (Rel homology region) Ankyrin only
    124395444 (gabpb1)
Mitochondrial biogenesis [BR:smeo03029]
 Mitochondrial quality control factors
  Regulator of mitochondrial biogenesis
   Ubiquitas transcription factors
    124395444 (gabpb1)
SSDB
Motif
Pfam: Ank Ank_2 Ank_3 Ank_4 Ank_5 ANK_LRRK2 Ank_KRIT1 CDC45 Cytomega_UL84
Other DBs
NCBI-GeneID: 124395444
NCBI-ProteinID: XP_046719871
LinkDB
Position
13:complement(1020767..1033472)
AA seq 361 aa
MSLVDLGKKLLEAARSGQDDEVRILMANGAPFTTDWLGTSPLHLSAQYGHYSTTEVLLRA
GVSRDARTKVDRTPLHMAASEGHASIVEVLLQHGADVNAKDMLKMTALHWAVEHGHGEVV
ALLLRFGADVHAQSKFGKTALDIALDNNNEDLAEILQVAMQNQINTNPESPDMLTIHTSS
PQFIIGPGGVVNLTGLISPSNTGKPAVMGTEEVVNADSVDGAIQQVVTAGGQQVITIVTD
GIQLGNLQGGGAINQPIIVTMPDGQQVLTVPATDVAEETVVSDEPSLKRARLEEGEDEEE
EENTTPPTQETKEKVALLKQLEEANREAQKYRQQFLKKEQEAEAYRQKLEAITRQGGKKP
A
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgtctctggtggatctggggaagaagttgctggaggcggctcgctctggacaggatgac
gaggttcggatccttatggccaacggggctccgttcaccacagactggctgggcacctca
ccgctccacctctcagctcagtacggtcactactccactactgaagtgctcctgcgtgcc
ggcgtcagcagagacgctcgcaccaaagtggatcgaacgcctctgcacatggccgcctca
gaaggccacgcctccatcgtagaggtgttgctgcagcacggtgccgacgtgaatgctaag
gacatgttgaagatgacggctctgcactgggcggttgaacatggacacggtgaggtggtg
gcgctgctgctgaggttcggtgctgatgttcacgcccagagcaaattcggcaaaacggcg
ctcgatatcgcgctcgacaacaacaacgaggacctggcagaaatcctacaggtggccatg
cagaaccagatcaacacaaacccagagagtcccgacatgctgaccatacacacttcctca
cctcagtttatcatcggaccagggggcgtggtcaacctcaccggcctcatctcaccatct
aacactggtaaacctgcagtgatgggcactgaagaggttgtgaacgcagattccgttgat
ggcgccattcagcaggtcgtgaccgccggaggacagcaagttatcaccatagtaaccgac
ggcattcagctgggaaatctgcaaggtggcggagccatcaaccagcccataatagtcacc
atgcctgatgggcagcaagtgttgaccgttccagccacagatgtagcggaggagacagtg
gtgagcgacgagccgtcactaaagcgagcaagactagaagaaggagaagatgaggaggaa
gaggagaacaccaccccacctacacaagagacgaaggagaaggtggcgttgttgaagcag
ttggaggaggccaacagagaggcgcaaaaatacagacagcagttcctgaagaaggagcag
gaggctgaagcgtaccgccaaaaactggaggccatcacacgccagggggggaagaaaccg
gcatga

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