Silurus meridionalis (southern catfish): 124395453
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Entry
124395453 CDS
T08004
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124395453 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124395453 (cstf3)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124395453 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_19
TPR_6
TPR_16
DUF2971
Motif
Other DBs
NCBI-GeneID:
124395453
NCBI-ProteinID:
XP_046719897
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All DBs
Position
13:22275992..22298175
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AA seq
716 aa
AA seq
DB search
MSAEVAPDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLITQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFSFADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDVRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSSEK
SGEIWARFLAFESNIGDLASILKVERRRFLAFKEEYEGKETALLVDRYKFMDLYPCSTSE
LKALGYKDVSRAKYASLIPEAVVAPSAPTLKDDGDRKPEYPKPDTNQMIPFQPRHLAPPG
LHPVPGGVFPVPPAAVILMKLLPPPNCFTGPFVQVDELMETFRRCTLPETVEAAVELITG
SRGDVPGEGNGPIENHALTNKSLKRSNPDSDEEEEKGAIAPPVNDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaagtcgctccggatcaggccgcggagtacattccggaaaaggtgaagaag
gccgaaaagaagttggaagaaaacccttatgacctggacgcatggagcatactgattcga
gaagcacagaaccaacctatagataaagcaaggaagacgtatgagagacttatcacgcag
ttcccaagttcgggcagattctggaagctatacattgaagccgagatcaaggctaaaaac
tatgacaaggttgaaaagctcttccagagatgcctcatgaaggttctgcacatcgacctg
tggaaatgttacctttcgtatgtgcgagagacgaaaggaaagctgcccagctacaaggaa
aagatggcgcaggcatacgatttcgccctagacaaaatcggaatggagatcatgtcatac
cagatatgggtggactacatcaactttctcaaaggagttgaagcggtgggctcgtatgcc
gagaaccagaggatcacggcagtacggagagtatatcagagaggctgcgtcaatcccatg
atcaacatcgagcagctgtggagagattacagcaaatatgaggagggtatcaatattcac
ttggccaaaaagatgattgaagatcgaagcagagactacatgaacgctcggagggtcgcc
aaggagtatgaaactgtgatgaagggtttggaccgaaacgcaccgtctgtgcccccgcaa
aactctcctcaggaggcccagcaggtggagatgtggaagaagtacatccaatgggaaaag
agtaacccactacgcacagaagaccaaacacttatcactaaaagagtgatgttcgcttat
gagcagtgccttttagtgctcggccatcatcctgacatctggtacgaagctgcccagtat
ctggaacaatccagcaagctactagcagaaaaaggggacatgaacaatgccaagctgttc
agcgacgaagctgctaacatttacgagcgtgccatttcaacgcttctgaagaaaaacatg
ctgctttatttctcttttgctgattatgaggagagtcgtatgaaatatgaaaaagtccac
agcatttacaaccgtcttctggccatagaggacattgacccaaccttggtttacatccag
tacatgaagtttgccagaagagcagagggaatcaagtccgggcgctccattttcaagaag
gccagagaggacgtcaggacgcggcatcacgtttacgttacggccgctctcatggagtac
tactgcagcaaggacaaatcagtggcttttaagatcttcgagcttggtctgaagaaatac
ggagacatccctgagtatattctggcgtacatcgattacctctctcacctcaatgaggac
aacaacacaagagtgctgtttgagagggttctgacttctggaagtctttcttcggaaaaa
tcaggggagatctgggcacgctttttagcatttgaaagcaacattggagacctggccagt
atcctgaaagtggagcgcagacgcttcctggcgtttaaagaggaatacgagggcaaggag
acggctctgttggtggacagatacaagttcatggatctgtacccctgctccaccagcgag
cttaaagctctcgggtacaaggatgtgtcccgtgccaaatacgcctctctgatcccagag
gctgttgttgcaccttctgccccgacgctgaaggatgatggagaccgtaaaccggagtat
cccaaaccagacaccaaccagatgatcccctttcagcctcgacatcttgccccccctggc
ctgcaccctgttccaggtggagtgtttcctgttccccctgctgctgtgatcctcatgaaa
ctgctgcctcctccaaattgtttcactggtccatttgtccaagtggatgagctcatggag
acgttcagaagatgcacactgccagagactgtagaagctgcggtggagttgatcacaggc
agccgtggtgatgttcccggagaaggaaacggacccatcgagaaccatgcgctaaccaac
aaatcactgaagaggtccaaccctgattcagatgaggaagaggaaaaaggtgctatcgct
ccaccggtcaacgacatctaccgtgccaggcagcagaagcgtatccgatga
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