Silurus meridionalis (southern catfish): 124395467
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Entry
124395467 CDS
T08004
Symbol
dhx36
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124395467 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124395467 (dhx36)
03012 Translation factors [BR:
smeo03012
]
124395467 (dhx36)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124395467 (dhx36)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124395467 (dhx36)
Translation factors [BR:
smeo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124395467 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_14
ATPase
AAA_19
Tn7_Tnp_TnsA_C
DUF7428
Motif
Other DBs
NCBI-GeneID:
124395467
NCBI-ProteinID:
XP_046719923
LinkDB
All DBs
Position
13:3900129..3927357
Genome browser
AA seq
1007 aa
AA seq
DB search
MSSGYGRGRGRRGGRGGGGGGERWSSDWDAGDEQHRGGGGRGRHPPHLKGREIGLWYAKR
GGQKRAEDERKSRAVVQMDESREQRITQLLNSVQREPSRDSGFQYRQPKPEPSGHSYFDG
DDPPEELQQTMKVAKMESVKVKVEKEEPELMTSVREKRVDRDLEYLVQEISRNPSLDEEL
EKDLQSKRQNSKYLDMLMFREKLPSYNMREELVTLIQSNRVVVVSGXTGCGKTTQVTQFI
LDDYIGRGMGSLCRVVCTQPRRISAISVAERVAAERAESVGEGKSCGYQIRLQSRLPRKQ
GSVLYCTTGIILQWLRSDPCLSSISHLVLDEIHERSLHSDVLLTIVKDLLRHRDELKVVL
MSATLNAEKFSRYFDNCPMVHIPGHTFPVKEYLLEDVIHMTGFRPQQQHDRRPRFRRGFL
NGQHVRPEKLEKEEEYKESWPCFARTLRERFSDSTIEVLEMLDEDDKINLELIVALIRHI
VLNEDDGAILVFLPGWDNISSLNDLFMADQMFKSDKFVIIPLHSLMPTVNQTQVFKRPPP
GVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRKGR
AGRVSPGKCYHLYNGLRASLLDAYQLPEIQRTSLEELCLQIKILKLGSIASFLRKTLDPP
SDKAIELAVTHLMDLNALDRSEELTPLGFHLARLPVEPHIGKMILFGALLACLDPVLIIA
ASLSFRDPFSIPLGKEKIADQRRKTLSKNTKSDHLTVVNAFRGWEEVKRRGYRYEREYCW
DNFLSANTLQMLQNMKGQFAEHLLAAGFVSSRDPKHPDANINSDNEKLLKAVIVAGLYPK
VAKIRPSPHKRRPIPAKVYTKADGKVCIHPKSVNSEETEFHYTWLIYHLKMRTTSIFLYD
CTEVSPFSLLFFGGDISIQKDKEQETIAVDEWIVFQSPARIAHLVKNLKKELDLLLEEKI
KQPRPVDWSDRASKDCAVISAIIDLITTQENTTSMQEPYRKSCQHWD
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggttatgggagaggacgcggccgcagaggaggacgtggtggaggcggagga
ggagagcgatggagctccgactgggatgccggggatgagcagcatcgaggcggaggaggc
cgcgggagacacccgccgcacctgaaaggcagagagatcggactgtggtacgccaaacgg
gggggacagaaacgcgcagaggacgagaggaagtcgagagccgtggttcagatggacgag
tcgcgagagcagcgcatcacacagctgctgaattcagtccagagagaaccctcacgtgac
tccggcttccagtaccggcagcccaaaccggaaccgagcggccacagctactttgacggc
gacgatcctccagaggagctgcagcaaacgatgaaagtggctaaaatggagtctgtgaag
gtgaaggtggagaaagaggagccggagctgatgaccagcgtcagggagaagcgtgtggat
cgagatcttgagtacctggtgcaggagatcagtcgaaatccttcactagatgaagagctg
gaaaaagaccttcagagcaaaagacagaattcgaaatacctggacatgctgatgttcaga
gagaagctgccgtcctacaatatgagagaggagctggtgacgctgatccagtctaaccgc
gtggtggtggtgagcgggnaaaccggctgtggcaaaaccacacaggtcactcagttcatc
ttggacgactacatcgggcgtggcatgggctctctctgcagggtggtgtgcacacagccc
cggcgtatcagcgccatatcggtagccgagagggtggcggcggagagggcggagtctgtg
ggagaagggaagtcttgcggatatcagatccgtctgcagagccggttgccacggaaacaa
ggctcggtgctgtattgtaccacgggaattattcttcagtggctgcgctcagatccgtgt
ttgtccagcatcagtcatctggtcctggacgagatccatgagcgcagtctgcactcagac
gtcctcctcaccatcgtgaaggacctgctgaggcacagagacgagctgaaggtggtgctc
atgagcgcgacgctgaacgccgagaagttcagcaggtacttcgataactgccccatggtc
cacattccaggacacaccttccctgtcaaagagtatctgctggaggatgtgatccacatg
actgggtttcggccgcagcagcagcacgatcggcgtcctcgcttcaggaggggcttcctg
aacggccaacacgtacgtcctgagaagctggagaaagaagaagaatacaaggagagctgg
ccgtgtttcgctcgcacacttcgagagaggttctccgacagcactatcgaagttttggag
atgttggacgaggacgacaagatcaacctggagctgatcgtagcactcatccgccacatc
gtgctgaatgaagacgacggagccatcttggtcttcctgcctggctgggacaacatcagc
agcctgaatgacctgttcatggccgaccagatgtttaaatcggataagtttgtgatcatt
ccactgcactcgctgatgcccacagtcaaccagacgcaggtttttaaaaggccacctcct
ggagtccggaagattgtgattgctacgaacattgcagaaaccagtattacgattgatgac
gtggtgtatgtgattgacggagggaaaattaaggaaacccacttcgacacgcagaacaat
atcagtaccatgacggcggagtgggtgagtctcgccaacgccaagcagaggaaaggacgc
gctggcagggtgtctccaggtaaatgctaccacctgtataatggcctgagggcgagtctg
ctggatgcatatcagctccctgagatccagcgcacgtcgctcgaagagctctgcctccag
ataaagatcctgaaattgggctcgatagcatcattcttgaggaagactttggacccccca
tcggacaaagccatcgagctggctgtcactcacctaatggatctgaatgcattagaccgg
agcgaggagttgactccgttgggattccacttggcccgcttgcctgtggagccacacatt
gggaagatgattctgttcggagcgctgctcgcctgcctggacccggtgctaatcattgca
gctagccttagctttagagacccattctctattccactggggaaggaaaaaattgctgac
cagagaagaaaaactctttccaaaaacactaagagtgatcacctgactgtagtgaacgcc
ttccggggctgggaggaggtgaagaggcggggctacaggtacgagcgggaatactgctgg
gacaacttcctgtctgccaacacactgcagatgttacagaatatgaaaggacagtttgca
gagcatctcctggccgccggcttcgtgagcagtagagacccgaagcatcccgacgccaac
attaactccgacaatgagaagctcctgaaggcggtgatcgtagccggtttataccccaaa
gtggccaagattcgcccgagcccacacaagaggagacccataccagcgaaggtgtacacc
aaggctgatgggaaggtctgtatacatcccaaatcggtcaactcggaggagacggagttc
cactacacctggctcatctatcacttgaagatgagaaccactagtatcttcctgtatgac
tgcacagaggtgtctccattctcgctcctcttcttcggtggtgacatctccatccagaag
gacaaggagcaggagaccattgcagtagacgaatggatcgtcttccagtctcctgcccgc
attgctcatttggtcaagaacctgaagaaagagctggatctgctgctggaggagaaaatt
aagcagcctcgtccggtcgactggagcgaccgcgcctccaaggactgcgccgtgatctcg
gccatcatcgacctcatcaccacgcaggagaacacgacgtccatgcaagagccctacagg
aagagctgccagcattgggactag
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