Silurus meridionalis (southern catfish): 124395507
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Entry
124395507 CDS
T08004
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124395507 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124395507 (trip12)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124395507 (trip12)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
HECT type E3
124395507 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
124395507
NCBI-ProteinID:
XP_046720000
LinkDB
All DBs
Position
13:18905968..18954380
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AA seq
2070 aa
AA seq
DB search
MSIRINHTAGGSLRRSQRNTLATRLQSEQTKQKTNSPPESRRSYTKASKAPPTPAGSSRG
HAPRRNSLSLSSHSHSTSDPDSEAAGSSGQYEQREVSNNRALKRSSAPDHNNTTYSPSPA
KRPKAPPPESSEQPALADPTADPAPELPSAARSKKRRLASEHPTSRTLSRKSGTCPATSP
SQKRKKADTPFSSSSSSSFSSSSSFLSGSSSELASRSSKPSKLASKSAASAKSVTDSASS
SSASSSSFTSSSSSSSSVVVAGASGCAPPSQGARLKQGKDQSKSRRSRSASSPSPRRSSR
DKEHSKSSTAASKFDWTSRFSPRVNLPKPRLALPGSSKPETPSGSSKPGPSGLQAKLASL
RKSNKKRSESPPAELPSFRRSTRQKTTGSCASTSRRGSGLGKRGAAETRRQDKMAENDNN
QDGANSSRTEETPQGASASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGP
RMSQLFHRTIGTGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKS
VVPALITLLQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAE
QALTALEMLSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFV
ADSLPLLTQRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTP
PVLSSGMFIMVVRMFSLMCSNCPNLAVQLMKQNIAETLRFLLCGASNGSCQEQIDLVPRS
PQELYELTSLICELMPCLPREGIFAVDAMLKKGSAHTTEAAVWQWRDDRGLWHPYNRIDS
RIIETAHQNGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLINPNTGHVEV
RGEDARAELMREEAELARCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFSDSELL
KDVLRNHAVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLA
ESESFLPSPPKACTSGITASTTTITTTTTPAASVAPDLGSPSFHNNMEDSLDLSPQGRLS
DVLKRKRLPRRVPRRPKYSPPRDDDKVDNQAKSPTTTASPKSSFLASLNPKTWGKLGAQN
NSTNSEPSRTAGVSGLARTVNKDSVSNNRDKIKAWIKEQASKFVERYFNSENVDGSNPAL
NVLQRLCTATEQLSLQVDGSVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSNTER
DIVSRNERIKRFLHVFYGSPVPGQEPLCRLEPTENGPLLSLVHKMNSCLSQMEQFPVKVH
DFPSGNGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYL
VVRGYGRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIADHLLPYNMTVYQA
VRQFSLQPEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGCKDSVGGKRGRAQTA
PTKTSPRNAKKLDELWHDGVCPSVSNPLESYLISEPPEGITFDDPSLEVILLLRVLHSIS
RYWFYLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPPWLTELGKTCPFFF
PFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQA
ESVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKG
TQEGTKYMFSSRGLFAVPFGRSTKPAHVAKIKIKFRFLGKLMAKAIMDFRLLDLPLGLPF
YKWMLRNESSIGSHDLVNIDPSVAKSIQHLEDIIRQKKRLEQDKSYTRETLQQALESLNM
NGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIHNLEEYLRLVVYWTLNEGVSRQFESFR
EGFESVFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEV
LSSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNY
LKLPDYSSIEIMREKLLMAAREGQQSFHLS
NT seq
6213 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcaggattaatcacactgcaggggggtcactgcgccgatcacagaggaacaca
ctcgccaccaggttgcagtcagaacaaaccaaacaaaagacaaattcccctcctgaaagt
agaagatcatatactaaagcttccaaagccccgcccacgcctgctggctcctcacgtggc
cacgcccctcgaagaaacagtctttctctctcttcacatagtcactctacatctgacccg
gattcggaggcagcaggaagctcaggccaatacgagcagcgtgaagtcagtaacaatcgt
gccctcaaacgtagttctgcacctgatcacaacaacaccacctactcacccagcccggcc
aagcggcccaaagctccgccccccgagagctccgaacagcctgcacttgctgaccctact
gctgaccccgcccctgaactcccatccgcagccaggtctaaaaagcgacggttggcctca
gaacatcctactagcaggacactaagcaggaagagcggcacgtgccctgccactagccct
tcccaaaaacgtaaaaaggcagacaccccgtttagttcctcttcttcctcctcattctct
tcctcttcctcttttttatccggctcgagcagcgagctggccagccgctcatccaaaccc
tccaaactggcgtccaaatcggccgcctcggccaaatctgtgaccgactccgcctcttcc
tcctccgcttcttcctcctccttcacgtcctcttcttcctcctcttcttctgtggtggtc
gcgggtgccagcggctgtgccccaccctcacagggtgcccggcttaagcagggtaaagat
cagagcaagtcgcggcgctctcgctccgcctcctcgccctctcctcgccgcagcagtcgc
gataaagagcacagcaaatccagcacagctgcttctaaatttgattggacgagccgcttc
agtcccagagtaaacttaccgaagcccagactcgccctgcccggatcctccaaacccgaa
actccatcggggtccagcaaacccggtccgagcggactgcaggccaaactcgccagtctg
agaaagtccaataagaagcgtagtgagtctccccccgcagaactccccagctttaggagg
agcacacgacaaaagaccacgggctcctgcgccagcaccagtcggcgaggttcaggttta
gggaagcgtggtgcagctgaaactcgccgacaggacaaaatggctgaaaacgacaacaat
caggatggagccaattcatcacgcacagaggagacaccacagggagcttcagcctccagt
tcagtagctggagctgttggaatgaccacatccggagagagcgaatcagacgactcggaa
atgggccgattgcaagctctgctggaggcacgtggtctgccccctcatctctttggacct
cgtatgtctcagctgttccatcgtaccattggcactggagcaagttcgaaggctcagcag
ctgctgcagggtcttcaggcaacaggggacgagtctcagcagctgcaggcagccatagaa
atgtgccagctgttggtgatggggaatgaggagacactgggaggatttcctgtgaagagt
gttgtacctgctttgatcacgctgttacaaatggagcataactttgatattatgaatcat
gcatctcgtgctcttacctacatgatggaggctctgccacgctcttcagctgtagttgta
gatgccattcctgtcttcctggaaaagcttcaggtgatccagtttatcgatgtagccgaa
caggctctcactgcgttggagatgctctcaaggagacacagcaaggccatcctccaggcc
ggcgggttggccgactgtttgctgtatctggagtttttcagtattaacgcgcagaggaac
gcgctagccatcgcggctaactgctgccagagcatcacacctgacgagtttcactttgta
gccgactcattgcctctactcactcagagacttacacatcaggataaaaagtcagtggaa
agcacgtgcctctgttttgcccggctggtcgacaattttcagcatgaagagaatttattg
cagcaggtggcatcacgtgacctgctaacgaacatccagcagcttctggtggtgactccg
ccggtgctgagttcaggcatgttcatcatggtggtgcgcatgttctcgctcatgtgctcc
aactgccccaaccttgctgtgcagctgatgaagcagaatattgcagagacactgcgtttc
ctgctttgtggagcatccaacggaagctgccaagagcaaatcgacctcgttcccagaagc
ccccaggaactatatgagctcacctccctcatctgtgagctgatgccatgcctccccaga
gagggcatttttgctgtagatgccatgttgaagaagggcagcgcacacactacagaggcc
gcggtgtggcaatggagggacgaccgaggcctgtggcatccttacaaccgcatagacagt
cgtattattgagacggcccatcagaacggtgaggatgagatcagcctctcaacactcggc
cgagtttacaccatcgacttcaactctatgcagcagatcaacgaggacacaggaactgca
cggggaatccagaggaaacccaaccccctgatcaaccctaacactggtcatgtggaggta
cgcggtgaggatgcacgtgcagagctgatgcgggaggaggcggagctagctcgctgcttt
attaagactctgtttggcgtgctgtacgaggtgtacagctcctcagccggccccgctgtt
agacacaagtgcctcagagccatcctgcgcatcatctatttctctgactccgagctgctc
aaggatgtgctgcgcaaccacgctgtctccagtcacatagcctccatgctgtccagtcag
gacctgaagattgtggtcggctctctgcagatggcagagatccttatgcagaaactccct
gatgtgttcagtgtgtacttcaggagagaaggtgtgatgcaccaggtgaagaacttggcc
gagagtgagtcgttcctccccagtccacccaaagcgtgcacgagcggcatcactgcatcg
actaccactatcaccacgacaaccacacctgccgcctccgttgcaccagatttgggttca
ccgagtttccataacaacatggaggactctctagacctcagcccacagggtcgtctcagt
gatgttctgaagagaaagcgccttcctcgcagagtaccacggcgtcccaaatattctcca
cccagagatgatgacaaagtggacaaccaggctaagagtcctaccaccactgcgtctccc
aaatcgtctttcctggcaagtcttaaccccaaaacctggggaaaacttggtgctcaaaac
aatagcactaactctgagccatcccgcacagctggggtcagtggcctcgcacgcactgtt
aacaaggactccgtttctaataacagggacaagattaaggcatggataaaggagcaggcc
agtaagtttgtggaacgatacttcaattcagagaacgtggatggcagcaacccagcactg
aacgttctgcagagactgtgtactgctacagagcagctcagcctgcaggtggacggcagt
gtggagtgtttagtggagatctgcagcattgtgtcagagtcggatgtgtcctcatttgag
attcagcacagtggacttgtaaagcagctgctgctctatttaacttccaacaccgagaga
gacatcgtcagtaggaacgagaggatcaaaagattcctgcatgttttttatggcagtcct
gttccaggccaggagccactgtgccggttggagccaacagagaatgggccactgttgtcg
cttgtgcacaaaatgaacagttgcctgagtcagatggagcagtttcctgttaaagtgcat
gactttcccagtggtaatggcaacggcagcagaggttctcaagcactgaaattctttaac
acacaccagctgaagtgccagttgcagagacacccagactgcaccaatgtcaagcagtgg
aaggggggacctgtcaaaatcgaccctcttgctcttgtacaggccattgagagatacctt
gttgtgagaggatacggtcgaatcagagaggaggatgaagacagtgacgatgacggatca
gatgatgaaattgacgagtcacttgctgctcaattccttaattcaggcagtgtgcgccac
cggctacagttctacatcgctgatcacctcctgccctacaacatgacagtataccaggcg
gtgcgtcagttcagcctgcagccagaggaggagcgtgagagcactgatgatgaggccaac
cctctcggtcgtgctggcatctggaccaaaacacatacaatatggtataagccggtcaga
gaggatgaggatggctgtaaggactctgtaggaggaaagaggggtcgagcgcaaacggct
cccactaaaacctcgccacgtaacgctaaaaaactggacgagctgtggcacgatggtgtt
tgtccaagtgtcagtaacccgttggagtcgtacctcatatctgaacccccagagggcatt
acatttgatgacccctcactggaggtcattttgctgttgagggttcttcactccatcagc
agatactggttctacctctatgataatgctgtgtgtaaggagatcattcccactagtgag
ttcatcaacagtaaactgaccgcaaaagcaaacagacagctgcaggatccgcttgtgatc
atgaccggaaatattccaccctggttaactgagctgggcaagacttgtccgttctttttt
ccatttgacacgaggcagatgttgttctatgtcacggcgttcgatcgtgaccgcgccatg
cagcgtttacttgacaccaaccctgaaatcaaccagtccgattctcaggacagccgcgta
gcaccccgcctggacaggaagaagcggacgataaacagagatgagctgttaaagcaggcg
gagtcagtgatgcaggatctgggcagttccagagccatgctggagattcagtatgaaaac
gaggtggggacaggtcttggtccaaccttggagttctatgctcttgtgtctcaggagctg
caaagagctgatctgggtttgtggcgaggagaggaggtcactcttgccaaccctaaaggg
actcaggagggcaccaagtacatgttcagctctaggggcctttttgctgtgccttttggt
cgcagcactaagcctgctcatgtcgccaagatcaagataaaattccgtttcctgggaaaa
ctcatggctaaagccatcatggacttcagactgctggatctgcccctgggtctgcccttt
tacaagtggatgttgagaaatgagtcgtcaataggctctcatgacttggtgaacatcgac
cccagtgtggccaaatccatccagcacctggaggacatcattaggcagaagaagagacta
gagcaggacaaatcctatacgagggagacactacagcaggctctggaaagtttaaatatg
aacggctgttcagtggaggatttagggctggactttacactgcccggattccccaacatc
gaactgaaaaaaggaggcaaggatgttccagtcaccatacacaacctggaggagtactta
aggttggtggtgtactggaccttaaatgagggtgtgtcccggcagttcgagtcatttagg
gaagggtttgagtctgttttccccctacaccacctacaatacttctacccagaagagctg
gaccagttgttgtgtggcagcaaatcagagacgtgggacgtcaaaactctgatggaatgc
tgcagaccggaccacgggtatacacatgacagccgggcagtgcgattcctttttgaggtg
ttgagtagctttgatgcagagcagcaaagactcttcttgcagttcgtgaccgggagcccg
agactgccagtaggaggattccggagtttgaatcctcctctgacaattgtgcgcaagacg
ttcgagtcaacggagaacccagacgacttcctgccgtctgtgatgacttgtgtcaactac
ctgaagcttccggattattccagcatcgagatcatgagggagaaactgttaatggcagca
cgggagggccagcagtcttttcacctttcttga
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integrated database retrieval system
