Silurus meridionalis (southern catfish): 124395513
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Entry
124395513 CDS
T08004
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124395513 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124395513 (edc4)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124395513 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
124395513 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EDC4L
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
124395513
NCBI-ProteinID:
XP_046720014
LinkDB
All DBs
Position
13:complement(14444240..14476260)
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AA seq
1383 aa
AA seq
DB search
MASSPSIDIEGATQHLRDILKLDRPSNSADSAAGESQRNTSCNGELNGLLGTDLIGAGVR
SAMMETTAHNSDSMNMADAQTISLTGDDDSTCIPITSSNVVIVASRDSSIGSKARGSNKV
KIQPVAKYDWEHKYYYGKLIAVSNSYLAYAIRGANNHYMVRVLRLGSTERTLLKGFTGSV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSENGKIQDEVIVHIRRPEDTPLNSNRRLIWCP
FIPEDNEENPEDGCQTLALLHEDRAEVWDLDILRSSNTTWPVDAMEIKEGFIAIKGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIDGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFSPDPVNSSVLPSLKASLDLSAEC
LILTDVQRKVLYVMELLQDQEKGHASFMAVSEFLLTHPVLSFGVQDVSHARLRHTEVLPP
DEESESMTTEGSQGPLESKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAAASLFMPTCSGS
QDGFGFADPFTDLSMEVLSSDKESGASGSQTDLCKIPSLPAPADFLSPSGSTMPKLMTPD
AFMTPNASVPASPGSSASSLTIVTAMSSSDSGPRAADDLTQSPKMCTDAVSSSLNLNAST
SSPRANSILISGLGENIQVLPSPNSSMSLDLQAMEPVLLPQASPTRARSPDVISSASTAI
SQDIIPEIASETLSRGLGEARDPLQGLQDSMASAASALQLLSPLDLSGGASGDGEQRLSS
TPSLLETALSQENAVNAVASSCSESGASRSWPAAPDITRETRNSLRDNGLGECSREDLKD
MHMSSPFHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGSRASHRLPVKDWKTSP
RGSPKLKRKSKKDEGDSSQSRHVDSQLSMEVQEELLLLLRSQQRELDELRQSQQELLQRL
TGNMDAVQSSIMAHVEHVLHTQQEQGQRTMERVLAEGHTRNQQLQEHMAQQLAHTLGTTV
SNRLDKVLREEMKKSVPQTITKSLEPLTGQMSNVIAAKLAAVETTLKENVTKVVKSKNTT
DAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLETH
VKNRKQREQDARDPIIGQLQLMIDSLQTSQDQLATTVAASVRSEVQHQLHMIVGNLQDSI
LNQVQRIVKGEVSQAMKEQQVVVTSSIMQAMRSAASTPVPTAHLDFQAQQASILQLLQQG
QLNEAFQQALSAADLNLVLYVCETVDSQQVFGQSPCPLHQAVLLSLIQQLSTNLVTRTDL
KISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSSLSKRARRLLMMLQGL
VNH
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagtcccagtatagatatagaaggcgcgacccagcacctcagagacatctta
aaactggatcggccctccaactctgccgacagtgctgcaggtgagagccagcggaacacc
tcgtgtaatggagagctaaacggccttttgggaactgaccttattggagcaggggttcga
agtgctatgatggaaacaacagctcacaactcagatagcatgaatatggctgatgcacag
acaatttccctgaccggtgacgatgactcgacctgcattcctatcacttccagcaatgtg
gtaattgtcgccagtcgagactcaagcattggcagtaaagctcgtgggagtaacaaggtt
aaaatccagccagtggcaaaatatgactgggagcacaagtattactatggcaaacttata
gcggtctctaattcatacttggcatatgccattagaggtgccaacaatcactatatggtc
cgtgtcctgcgtttgggctcgacggagcgcacgctgctgaagggttttactggttctgtc
acagacctggcctttgcccatcttgactccaccctgctgggctgtgtggacgaagccggc
aacatgttcatctggcagctcaccagtgaaaatggcaaaatacaagatgaggtgattgtg
catatccggagacctgaagacactccactaaactcgaatcgaagacttatctggtgcccc
ttcattcctgaggacaatgaggagaacccagaggatggctgccagacactggcattgctg
catgaagatagggctgaggtttgggaccttgacatcctgcgttcgagcaacaccacatgg
cctgtggatgctatggagattaaagagggcttcatcgccattaaaggacatacggcgcgt
atcagcgaaggtgctttgtcaccagatggcacggtcctcgccacagccagtcatgatggc
tatgtcaaattctggcagatctatattgacggacaggaccaaccaagatgtttacatgag
tggcagccacataatggacggcctctctcctgcctcctcttctgtgacaaccataagaag
caggatccagacgtgccgttctggcgattcttaatcacaggagcagatcagaaccaggaa
ctgaagatgtggtgcacagtatcgtggacttgtctacagactattaagtttagtcctgac
ccagtaaactcgagtgttctgcccagtctgaaagccagtctggacctgtctgctgagtgc
ctcattttaacagatgtgcagaggaaggttctgtatgtgatggagcttcttcaggatcag
gagaagggccatgctagttttatggctgtctcagagttcctgcttacacaccctgttcta
agctttggtgttcaggatgtcagccatgctcgcttgcggcacactgaagtcctcccgcca
gacgaggagagtgaaagcatgaccacagagggaagccagggaccactggagtcaaaatca
ggaatccagatcaaactttactgtgtgcatacaaagtcccttcaggatgtgcagatctgg
ttccagcctaaccagggcgctgctgctgcttccctgtttatgcctacatgctctggctcc
caggacggctttggttttgcagaccctttcactgatttgagcatggaggtgttgagctca
gataaggaatctggtgcaagtggttcacagacagacctatgtaagatcccctctctccca
gctccagctgacttcctgagcccctctggttcaaccatgcctaaactcatgaccccggat
gccttcatgacacccaacgcatccgtaccagcctcccctggcagcagtgccagcagtttg
actatagtaactgccatgagcagctcagacagtggtccaagggctgcagatgacctcacc
cagagccctaagatgtgtacagatgcagtcagtagcagcttgaacctcaatgccagcact
agcagccctagagccaactcgatcctcatttcaggcctgggcgagaatatccaggtgctg
ccctctccgaattcctctatgtctctcgacctccaggctatggaacctgtgctgctaccc
caggcatcccctactagagctcgctcacctgacgtaatctcttcggcctccacggccata
tcgcaggacatcatccctgagattgcctcagagacattgtctagggggttgggcgaggca
cgtgaccccctccagggccttcaggacagcatggcatcagcagcctcagcactgcaactg
ctctcaccactggacttgagtggaggagcatctggagatggtgagcaaaggctcagcagc
acgccctcattgctggagacagcgctgtcgcaggaaaacgcagttaacgcagttgcatca
tcttgctccgaaagtggtgccagccgcagctggcctgcagcacccgatatcacacgtgaa
acacggaacagcctgcgagataacggcctgggagaatgctctagagaggacttgaaggac
atgcacatgtcgtcccccttccacagacgcacctaccacctaacacagaatgacagccag
gatgccagtgcagaacagagcgatcatgatgatgaggtggccagtctggcctcatcttca
ggaaactgtggctctcgagcctctcacaggctcccagtgaaggactggaagacttcacct
cgtggctcgcccaaactcaagcgcaagagcaaaaaagatgaaggtgattcttcgcagtcc
aggcatgtggatagtcagctgagcatggaggtacaggaggagctgctgttgctgcttagg
agccaacagagggagctggatgagctgcggcagagccagcaggagctgttgcagaggctc
acgggcaacatggatgctgtccagagctccataatggcccacgtagagcacgtcctgcac
actcaacaggaacaaggacaaagaacaatggagcgggtgttggcagaggggcacacacgg
aaccagcagctccaagagcacatggcacagcaactggctcacaccctgggcaccactgtc
tcaaatcgcctggacaaagtgttacgtgaggagatgaaaaaatcagttcctcagaccata
acaaagagtctggaaccactgactggacagatgagtaacgttattgcagccaagcttgct
gcagtagagactacactaaaggaaaatgtcaccaaagttgttaagtctaagaacactact
gatgccatcggtcgagctgcagccgaagccatgcagggtcctatccaggcagcctacaaa
gatgccttccaaagcattgtgcttcctgtatttgaacgtggctgccagtctatgtttcag
cagataaatgacagctttaaacaaggaaccaatgagtacattcagcagctggaaacacat
gtcaaaaacaggaagcagagagaacaagatgccagagaccctataattggtcagttgcag
ctgatgattgattcattgcagacttcccaagaccagctggccaccacagtagcagccagt
gtgcgctctgaggttcagcaccaacttcacatgattgtgggaaatctgcaggattcgatc
cttaaccaggtgcagcgcattgtgaagggcgaggtgagccaggctatgaaggagcaacag
gtggtcgtcacatctagcatcatgcaggccatgcgctcagcggccagcacacccgtccca
actgcccacctcgacttccaggcgcagcaggccagcatcctgcagctgctgcaacagggt
cagctcaatgaggctttccagcaggcattgtctgcagccgatttgaacctggtactctac
gtgtgtgagaccgttgactcccagcaagtgtttggccagagcccttgtcccctgcaccag
gctgtgctgctctcacttatccagcagctctccaccaacctggttacacgcaccgacctc
aagatcagctatctggaggatgctgtgatgaacctagatcatggtgacccagtcaccagg
gaccacatgagcgccgtgctgtcacaagtgcgtcagaagctgttccagttcctacagcag
gaccctcacagctccctgagcaagcgtgctcgccgcctcctgatgatgctgcagggtctt
gttaaccactaa
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