Silurus meridionalis (southern catfish): 124395623
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Entry
124395623 CDS
T08004
Symbol
dennd4a
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124395623 (dennd4a)
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
124395623 (dennd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR
DUF2464
PPR_long
HSL_N
Motif
Other DBs
NCBI-GeneID:
124395623
NCBI-ProteinID:
XP_046720257
LinkDB
All DBs
Position
13:complement(12981614..13012552)
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AA seq
1724 aa
AA seq
DB search
MEEKSPRVADYFVVAGLTEFSEPFEEDITCNESCQRSSTQAEAPITDVAVVFRSQGEEVP
PGYTCIECTPSGLSAELNGGSIIAPQIFLCYRRGRDKPPLTDLGILYEWREKLKPGCHII
QNTPSGRPANISSSSSQRIYITYRRAPECHSHATLAVTDICVIIPGKGETPPYAFCKVDK
NLNSSMWGSSVYLCYKKSLAKTNTLAFKAGLLSRYPEEDYESFPLPESVPLFCLPMGASI
ECWPSQTKYSLPVFSTFVLTGASGEKVYGAAIQFYEVYPEERLTDRQRTLLGLQASGPRT
EDSMTVHTNKSICLLSRWPFFDAFNTFLTFLYRYSISGPHTLPIEKHISNFMHKVPFPSS
QRPRILVQLSPHDSLMLSQPVSSPLPLSGGSLSTLLLNLGPKNSVTLLVLAVTEHKILVH
SLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYFDLYEPP
ADISCVDLDTNTISHKEDRRALTWKILPRKACKRLINTLSNLHQELVQDYLLSREEGHID
AAMSEREPGSGVKSLQSLELEIQEAFLRFMAAILKGYRSYLLPITQAPSEKATDASSLYD
LQGFLKSRDRSNQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKLFGTEKGGK
VDSERPEDTRLIELDKSHRSEHTVFITPPELPPVPEGEEPSILYSYSGFPVLNAELCEPQ
KGLDIPMATSNSRHTSPGSPAAIFRRSKQEIKSSQRMAKIYSSIPHMWSKCLLRHCHGLW
FICLPAYVAACHSKVRALRAAYDVLRMMQDKKLQPPDEVCYRILMQLCGQYGQPVLAVRV
LFEMKKAGVQPNAITYGYYNRAVLESTWPSSTRGGYFLWGKLRNVVRGVVQFKQVWRRQA
SHAKDPHLSDASDLDSVSHGSLDSTNDSAERASIDTDFTKMDSSDDGSSTGGQSDQGYDS
LSKEEVRLGGGEEQDSSSHMKEKKERESIPLAKTGTSIKKDSSVLLKPSDVRGTVAVPKR
PNSLDIFGKNTIRPSKLELNSNQLLNVSEGCKQKQTYSDEAVLEEATDTTYPLKPASERS
TSCTVARETSISDARCSVARSVSFGSSLGHVPQRTGIESGFDPLSLLAAESKAGKPDESV
EMDGAPGTCRHLADEIQLYMENLSSPVSQRSLSTDLRSLQSPSPHSSPRQTAVPGSPSTQ
LQPQLRSRLFSTPSLPLRCQRRSSLVRPTSLVSPSSPTPSSSSFSMESLLTPTLDVFRSS
FMSAGKGVAEKASRLYSRLSSQTSIAQDLNSDQVSVSSLGSGEPDCSSLFEGELSLDPDG
LSSPQRDASLNVTPFKKSPNRNSRCLESPSAPSRLFRQASLLGSSLAVVKAPQTPDVCPD
VSLQQHYDIEVHMSSCSRCNTCECLAYDEEIMAGWTADDSNLNSTCHFCGSAFLPLLNVD
IQDLTSQERIPCQGQSSSQLETNGASDDDEEPSRKSTESVSKCASTEPITVPYLSPLVLW
KELESLLENEGEQVISSPAIVDHHPIVFWNLVWFFRRLELPSSLPALLLSSMHCSQNMQI
DPQPLQSSASEDSKNVLIQILWDNPKLHQDPIPPCYMLWNAHCSNSDVCVSSLMEEKQPV
SLELLQSVVRSIQKNDVYQPMSQILQLLGTRLGFIRQRSLYRDILFLTLVALGKNSINID
AFDREYKLAYDRLTPSQVKLTHNCDRPPGAGVMECRRTFGLPCL
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaaagccctcgtgtagcagactactttgttgtggcaggcctcactgagttt
tcagagccctttgaagaggacataacgtgcaatgaaagctgccagaggagctcaacccaa
gctgaggcgccaatcacagacgtggcggtggtgtttcgttctcagggcgaggaggtgccg
ccgggctacacctgcatcgagtgtactccctctggcctttctgctgagctgaacggtggg
agcatcatagccccacagatctttctgtgctacaggcgaggacgggacaagccgcctctc
actgaccttggcattctctatgagtggagggagaaattgaagccgggatgccacatcatc
caaaacacaccttctggtcgtcctgcgaacatcagcagctcttcctcacaaagaatctac
atcacataccgtcgtgctcccgagtgtcattctcatgccacactggctgtcacagacatt
tgtgttatcattcccggcaaaggagaaacaccaccatatgccttctgcaaagtggacaaa
aacctaaacagcagcatgtgggggtcctctgtctacctgtgctacaaaaagtctttggcc
aaaacgaacactcttgcattcaaagcaggtttgctatcacggtacccagaagaggactac
gaatcgtttcctttgcccgagtcagtccccctgttctgcctgccaatgggagcatccata
gagtgctggccctctcaaacgaaatactctctgcctgtattctcgacatttgttctcact
ggagcttctggagaaaaggtttatggtgcagcgatccagttttacgaggtgtacccagag
gagcgtctgactgataggcagcgcacactgctgggactacaagccagtggcccgaggact
gaagactcaatgacggtccacaccaacaagagcatctgccttctttctcgctggcccttt
ttcgatgctttcaacactttcctcaccttcctctaccgctactcaatttccgggcctcat
acgttgcccattgagaagcatatctctaattttatgcacaaagtccctttcccatcttct
caaagacctcgcattctggtccagctatctccacacgatagccttatgctgagccagcct
gtttcttctcctctgcctctgagtggtggaagtctctctacactgctactaaatctgggt
cctaaaaactcagtgacattactagttctggctgtgacagagcacaagattctggtgcat
tcactgcggccagctgtgctaaccagcgttaccgaggccctggtttcaatgatctttcct
ttccactggccatgcccatacattcccctgtgcccattagcactggcggatgtgctcagc
gctccatgccccttcatagttggggtggattcacgctattttgatctgtatgagccaccg
gcagacatcagctgtgtggatctagacactaacaccatctcacacaaagaagatcgcaga
gccctgacatggaagattctgccaaggaaagcctgtaaacgtctgatcaataccctcagc
aatctccatcaggagctggtgcaggattatttactcagtcgtgaggaaggccatatagat
gccgctatgagtgagcgtgaacctggcagtggcgtaaagagtctccagtcgctggagtta
gagatccaagaagccttcttgcgtttcatggcagccatcttaaagggttaccgctcgtac
ttgcttcccattacccaggctccctcagaaaaagcaactgatgccagctccctctacgac
ctacaaggattcttgaaaagtcgtgatcgctcaaatcagaagttttactccctcatgacc
aagactcagatgttcatccgctttattgaagagtgctcctttgtcagtgataaggatgca
agcttggcgttttttgatgactgtgtcgacaagctctttggcacagaaaaaggaggaaag
gtggacagtgagagaccggaagataccaggcttattgagctagacaaatcacatcgcagt
gaacacacagtgttcatcacacctccagagcttcctcctgtgcccgagggagaagagccc
tccattctttatagctacagcggcttccctgtgctgaatgctgaactctgtgaaccccag
aagggcttggacatccccatggcaacctcaaactccagacacaccagccctgggagtcca
gccgccattttccgccgctccaaacaggagattaaatcatcccagcgcatggccaaaata
tactcatcaatacctcacatgtggtccaagtgtctgctgcgccactgccatggcctgtgg
ttcatctgcctgccagcatatgtagctgcgtgccactctaaagtacgggcactccgagct
gcttacgatgtactgaggatgatgcaggacaagaagctacagccacctgatgaggtgtgt
taccggatcctgatgcagctctgtgggcagtacggacagccagtcttggcggtacgagtg
ttgtttgagatgaagaaggctggagttcagcccaatgctataacatacggatactataac
agagcggtgttggagagtacatggccttcctccactagagggggctatttcctgtggggt
aaattgcgcaatgtagtccggggtgtggtgcagttcaaacaagtgtggagaaggcaggct
agtcatgctaaagatcctcacctctcagatgccagtgatctggacagcgtgagccatggc
agtctggacagcactaatgactcagcagagcgagcctctatcgatactgattttaccaaa
atggactccagcgatgatggatccagcacaggtggacaatcagatcagggctatgactca
ttgtctaaagaggaggtgcgattggggggaggagaagagcaggatagctcttctcacatg
aaggagaagaaggagagagagagcattccactggccaagacaggaacatctataaagaag
gactcatcggttttactgaaaccctcagatgtaagaggcactgtagcagtgcccaaacgc
cccaactcactggacatctttgggaaaaatactataaggcccagtaaattggaactaaat
tctaatcaactgctgaatgtctctgaagggtgcaaacagaagcaaacgtattcagatgag
gcggtattagaggaagcaacagacaccacatacccactcaaacctgcttcagagaggagt
acaagttgcacagttgccagggagactagcattagcgatgcacgttgcagtgtggcaagg
agtgtgagcttcggcagctcactaggccatgtgccacaacgtacagggattgagtctggc
tttgatccattatctcttctggcagctgaaagcaaggctggaaagccagatgagtcagta
gaaatggatggtgcccctggcacatgccgccacctggctgatgagattcagctttacatg
gagaacctgagcagccctgtgagtcagcgatctctcagtacagatctacgcagcctccag
agcccctcaccacacagctcgcctcgccagactgctgtaccaggatctccaagcacccag
ttgcagccccagctccggagcagactgttctccacaccctcactgccactgcgatgccaa
cgtagaagcagcttagtccggcccacctcattagtctcaccatcctcacccacaccttca
tcatcctccttctctatggaatccctgcttacacccacactagatgtgtttaggagcagc
ttcatgtctgcagggaagggtgtggctgagaaggctagtcgtctttattcaaggctctct
tcacagacttccattgcacaggacctgaattctgatcaggtgagcgtgtcttcattgggc
tcaggtgagcctgactgctcctctctgtttgagggtgaactcagtcttgacccagacggt
ctttcctccccccaacgagatgcctctctcaacgtcacgccctttaagaaaagtccaaac
aggaacagtcgctgtttagagagtccttctgcaccttccaggctttttcgccaggcctcc
ctccttggatcatcactggcagtagtgaaagcccctcaaaccccagatgtgtgtcctgat
gtcagcctccagcagcattatgacatagaggtgcacatgtccagttgctcacgctgcaac
acttgcgagtgcctggcatatgatgaagagatcatggctggctggacagctgatgactcc
aatttgaatagcacttgccatttttgtggctcagctttcttgcctctgcttaatgtggac
attcaggacctgaccagccaggaaagaattccatgtcaaggccagtctagttctcagttg
gaaacaaatggtgcttcagatgatgatgaagagccaagcagaaaatccacagagagtgtc
tccaaatgtgctagcacagagccaatcaccgtgccctacttgagccctctggtgctgtgg
aaggagctggagagcctcttggagaacgagggtgagcaggttatttcttcaccagccatt
gtggaccaccaccccattgtcttctggaatctggtgtggtttttccgcagactggagctg
cccagcagcctgcctgccctcctcctcagctccatgcactgcagtcaaaacatgcagatt
gatccacaacctctccagagcagtgcctcagaggacagtaagaatgtgttaatccagatt
ttgtgggacaaccccaaactgcaccaggatcctatcccaccttgctacatgctgtggaat
gcacactgttcaaactctgatgtttgtgtctcctccttgatggaggagaaacagcctgtg
agcctggagcttctccagagtgttgtcaggagcattcagaagaacgatgtctaccagccc
atgagtcagatacttcagctgcttggtaccagactgggattcatcagacaacggagccta
tatagagatatcctattcttgacattggtggctttgggcaagaacagtatcaacattgat
gcttttgaccgtgagtacaagttggcgtatgatcgactcacccccagccaggtcaagtta
actcacaactgtgaccgtccacctggcgctggagtcatggaatgtagaagaacttttggg
ctgccatgtctgtaa
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integrated database retrieval system
