Silurus meridionalis (southern catfish): 124395659
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Entry
124395659 CDS
T08004
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04517
IgSF CAM signaling
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
124395659
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124395659
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124395659
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
124395659
Intermediate filaments
Intermediate filament-binding proteins
124395659
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
Helical_needle
YdjO
TMP_3
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
124395659
NCBI-ProteinID:
XP_046720319
LinkDB
All DBs
Position
13:19396636..19465204
Genome browser
AA seq
2559 aa
AA seq
DB search
MASAATDLDNAEAQRQLNNNNRPSSTGFWESETTSAKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIHNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNIA
EQSLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRIGKVLDNAIEAE
KIIQRYEALASDLLEWIEKNISIISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADISSYEERMGAL
VELAMEMESEGYYDIRRIMARKDNILKQWDLLKELVTARKTRLEKNLALQKTFQEMVYMI
DWMEEMQMKLLSKDFGKHLLEVEDLLQKHTLQEADITVQADRVQTLNSAALKFTTIDGYQ
PCDPQVICNRVNHVNTCLEELIQLAAKRRSELEDSRELWVFFQEVEECDCWMREKISILN
TQSCGKDLSSVLKLLQKHKSLAGELLARRALLQQTMKNGKQIVTQKRLCAAGINDKLMEV
KEDWKRLEDQAAMRLGHLQEALDFFQFSAEMDDQLAWLQDAYRLVSSDDFGHDEFSTQSL
LKKHVRVCEEVDKHRQNVVALHQHAVVLPLHYGEIEEVKERIHEVERVYSEVAEVAVMRQ
QWLNDALAVYRMFSEVNACELWIDEKEKWLNKMDVPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNRIVQQLLDSDHPSSAEVRGCQDHLNSRWNNMVELVEKKKDHLDSILRIQNYLL
ECSEIKSQIQEKRKAIDATQYSGSDLGSVLALQRRLSTMEGALAVLEPKLIHLQQEAEDL
ATSDPHKAEEILIPFEGVSVEWDELKRTLQGCEDSLTVAGRLQQFIQDLDSFLTWMVQKQ
TEAASNELPESLDEAERLINLHAALNEEIHSYEEDFERLQAVRELLDTEDTLLANAALHQ
WLQKLSAGWNKLLQMWESRRDELVQAHIYHLFMKDVKQAEAFLNNQESSLAHVELPTTVE
TVEAAIKKHKEFSMAMELNLHRIKAVIEAGESLISQNNIYSERIRDRVDLLITRGNQNRE
VAQQWLRKLTDQWELQRFMQDCHELGDWVMEKMLMARDSTCDDTQQLHKKWLKHQAFMAE
LSQNKEWLDKIQKEGERLMVEKPELSSMVQQKLSEIHECWLDLENSTQVKALQLFENNRG
HQITQNYTRLNERVQQLELQLNHCDYSHDLTSVNKQLKKLQMMERQMEEWCNEVCDLQLQ
SSSLPEECVMADSVSVRQAEVEARIVRLIEPLKERRRILLASKEVHQVRRDLQDEILWVQ
ERLPFAMSQESGSSLQAVQQLMKKNQSLQRELETHRGHVEEVMERASLFSSVRTAEAECV
SALMEDLQGLWAALWAETEHKQQHLDSMYHAQQYYSDITEVEAWLSEQELHMMNEEKGKD
ESSTLQLLKKQLSLEQSIEDYAETIGLLSQQCRQLLELSHPDSDQISKRQSQIDRLYVSL
KDLVEERKCRLEQQYWLFQLHREVEELEQWIAEREISASSTELGQDYEHVTILQEKFTEF
SSETGSMGQERVMAINQMVDELIDFGHADAAIIAEWKDGVNESWAELMELMETRAQMLAA
SHQLHKFFSDCREVITQIADKHRRLPEVRECQDGTVNTSSLQRLMSTFEHDIQLLVGQVR
QLQENAAQLRTVYAGEKAEAIAMQEYEVMRAWKELIMSCEECRVQITTASDKLRFFSIVR
DQLMWMESIICQIGTGEKPRDVSSVEVLMNYHQGLKSEVEARNKNMVQCIEMGKTLLATR
NQASDEIKEKLEKVLAKQRELTEKWDKHWEELQHMLEIHQFAQEAVVAESWLSSQEAFLF
NQELGRSVDEVEQLIRRHEAFRKAASTWEERFSSLRRLTTVEKMKAEQSKLPPTPLLGRK
VFLDPQDSSPARSSPSSLHKQTIYEQGDYWSERNVAQASPPLASRRLGPTVSNYTPIVSG
PATLLIQEARNTGVLGVAAGLGTATDHKSTQIKPVHPIKDVNVMAEVVLQEPGCSGGSRI
ELQVEQQRPHGKDLRVERQLSNEQLIQARRDELPQEVWRERAEREKRLERQTSSEQEVFE
TRRKDRHRLEKQESSEHETAKEPSDRRSGGGEKRSTLADIVEQLQEREAAQARGEIPRVP
NGVPEKSRLDRPRARDRPKPRRRPRPKDGTQGETRRSRSAPAQSSSSVPQPPSHHAQREG
FLFRKLDIESQKKSSNSRSWVNLYCILNKGELGFFKDSKNITSTYNNEPRLSLNSCSCDI
NLGYKKKKNVFTLKTKDGSEFLFHAKDEDDLKAWISNINMCIGEHEDITKWGQSHPTTSS
TDEGTRREGSRAEKSDRADRGSERSDKGEKMEKKSGKKK
NT seq
7680 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgccgctacggatctggacaatgccgaagcccagagacaattaaacaacaac
aaccggcccagcagcacaggattctgggaaagtgaaaccactagtgctaaactgtttgaa
tgctcacgcatcaaagcattagcagatgaaagggatgcagtgcagaagaaaaccttcact
aagtgggtgaactctcacctggctcgcgtctcttgccgcatctctgatctgtataatgac
ctgagagatggttacatgctcaccaggctactggaagtgctttcaggagaacttctgccc
cgacccacaagaggcagaatgcgaatacattgtctggagaatgtggataaagccttgcag
ttccttaaagagcagagagttcatctggagaacgttggctctcatgatattgttgatggc
aaccatcgtcttacactcggcctcatctggaccattatccttcgcttccagatccaagtg
attaaaattgagacagaggacaacagggagactcgctcggctaaagatgcgctgttactg
tggtgccagatgaaaacagcagggtatcctgaagtaaacattcacaatttcaccacatgc
tggagggatggattggctttcaacgcccttatacatcgacacaggcctgatttgattgaa
tttcacaagctgaccagatcgaatgccacacacaatctgcagcaagcctttaatattgct
gagcagagtctcggacttactaaacttcttgatccagaggatgtgaacactgagaatccg
gatgaaaagtctattataacatacgttgtgtcttactaccactacttctcaaaaatgaaa
gctcttattgtagagggcaaacgaattggaaaggttttggataacgccatagaagccgag
aagattattcagcgttatgaagctctggcctcagatctgctggagtggattgaaaaaaac
atcagtattattagcaaccaaaagtttgctaactctctaacaggagtacaacagcagcta
caggccttcacaacctactgcaccattgaaaagcctataaagttccaggaaaaagggaat
cttgaggtgcttctttttaccatccaaagcaaactcagagccaacaaccagaagccatat
gtgcctcatgatggaaagctcatttctgacatcaacaaggcatgggagaggctagagaaa
gcagagcatgaaagaggtgtggctttaaggaaagagctgatacgtcaggagaaactagag
ctgcttgctcagcggtttgatcacaaaaccaccatgaggcaggcatggcttaatgaaaac
cagcggcttgtttctcaggacaattttggatatgacctgccagccgtggaggcagcgatg
aagaagcacgaggcgatcgaggctgacatctcgtcatatgaggagcgcatgggtgcattg
gtggaactggccatggagatggagagcgaaggatattacgacatcagacgcatcatggct
cggaaagacaacatcctaaaacaatgggatctgctcaaagaacttgtgacagctcgaaaa
acacggctggagaaaaacctggcgctgcaaaaaacatttcaggaaatggtctacatgatt
gattggatggaggagatgcagatgaaactgctctctaaagactttggtaaacacctgctg
gaggtggaggacctgctgcaaaaacacactttacaggaggctgacatcactgtacaggca
gaccgtgtccaaacactcaactctgctgcacttaaatttaccaccatagatggataccag
ccatgcgacccgcaggtgatctgcaatcgtgtaaatcacgtaaacacttgtctggaggaa
ttgatacagctagcagctaaacgtcgctctgagctagaggattctcgtgagttgtgggtt
tttttccaggaagtagaagagtgtgattgctggatgcgcgagaagatctcaatcctgaac
acacagagttgcggcaaagatcttagcagcgttctgaagctcctgcaaaagcacaagagc
cttgctggggagctgttagcacgacgtgcccttctccagcagactatgaaaaatgggaag
caaatcgtcacgcaaaaacggttatgcgcagctgggataaatgacaagttgatggaggtg
aaggaagattggaaacgtctggaggatcaagccgcgatgagactaggtcacctgcaggag
gcactggatttctttcagtttagtgctgaaatggatgatcagctagcgtggcttcaggat
gcctacagacttgtctctagtgacgatttcggtcacgatgagttttctacgcagtcgctg
cttaagaagcatgtccgtgtttgtgaggaggtggacaagcaccggcagaacgttgtagca
cttcatcagcacgcagtagtactgccgcttcattatggagagatagaagaggtgaaggag
cggatacatgaagtggagcgtgtctatagtgaggtggcagaggttgcagtgatgcgacaa
cagtggctgaatgatgctcttgctgtctaccgcatgttcagcgaggtgaacgcatgtgag
ctgtggattgacgaaaaggaaaaatggctgaacaaaatggatgttcctgaaagacttgag
gatgttgaggtggtcgcccacaggtttgagagcctggaccaggagatgaacagcttgatg
ggaaggatcctggatgtgaatcgtattgttcagcagctcttggacagtgaccatcccagt
tctgctgaggtcagagggtgtcaggatcacttgaacagcagatggaacaatatggtggag
ctggttgagaagaagaaggatcatttggactcaatccttcgtatccagaattatttactc
gaatgcagtgagatcaaatcacaaattcaggaaaaacgcaaagctattgatgctacgcag
tattcaggcagcgatctgggcagcgtcttggcactgcaacgacgtctgtccacgatggag
ggagcgctcgccgttctagagcccaaactcatccatttacagcaagaagcagaagacctt
gcaacctctgatccacacaaagcggaggagatcctgattccctttgagggggtgagtgtg
gagtgggacgaattaaagcgtactctacagggttgcgaggattcactgactgtagctgga
cgcctacagcagttcattcaggatttggattctttcttgacatggatggtgcagaaacag
acagaggcagcatctaacgagctgcctgagtctttggacgaggctgagaggctcatcaac
ctccacgcagctcttaacgaagaaattcacagttacgaggaggattttgagcgtctacag
gctgtgagggagctgctggacacagaggacactctgttagccaatgctgcactgcaccag
tggctccagaaacttagtgcaggctggaacaagctgctacagatgtgggagagcaggagg
gatgagctagtgcaggcacacatctaccatcttttcatgaaagacgttaagcaggctgag
gcctttctcaacaaccaggagtcctcgctggcacacgtggagctccctaccacagtggag
actgtggaagcagccattaagaaacacaaagagttcagcatggcgatggagctcaatctg
caccggatcaaagctgtgatcgaggcaggagagagtctcatcagccagaacaacatctac
tctgagcgtatccgagatcgggttgatttactcattaccagggggaatcaaaaccgtgaa
gtggcacagcagtggctcagaaaactcactgatcagtgggagctgcagagatttatgcag
gactgccatgagctgggtgactgggtgatggagaagatgctaatggcacgtgactcaacc
tgtgatgacactcagcagcttcataaaaaatggctaaagcaccaagcgttcatggccgaa
ctctcacagaacaaagagtggctcgacaaaattcagaaggaaggtgagcggctgatggtg
gagaagccggagctgagctccatggttcagcagaagctcagtgagattcatgagtgttgg
ctggacctggaaaactctacgcaggtcaaagcactgcagctgtttgagaacaaccggggg
catcagatcactcaaaattacactcggctgaacgagcgcgtgcagcagctggagctgcag
ctaaaccactgtgactacagccatgacctcacctccgtcaacaagcagctcaaaaagctc
cagatgatggagcgacaaatggaggagtggtgtaatgaagtgtgtgatctgcaacttcag
tcatcctctctccccgaggagtgtgtgatggcagactcggtgtctgtgcgtcaggctgaa
gtagaggcacggatcgtacgtctcatcgagcctctgaaggagagacgaagaatcctgctc
gcatccaaagaagtgcaccaagtgcgccgcgacctgcaggatgaaattctgtgggtgcaa
gagcgccttccattcgctatgtcacaggaatccgggagtagtttacaggctgtgcagcag
ctcatgaagaaaaatcagagcctacaaagggagctggagacccaccgggggcatgtggaa
gaggtgatggaaagagcgagcctgttctcatcagtgcgcacggccgaggcggagtgtgtg
agcgcattaatggaggatctgcaaggcctatgggcggcactgtgggccgagacagagcat
aaacaacagcatttagactccatgtatcatgctcaacagtactacagtgacattactgag
gtggaggcatggctcagcgaacaggagctgcacatgatgaatgaggagaaaggaaaggat
gaatcgagtacgctgcagctgctaaaaaaacagttatctttggagcagtcaatcgaggat
tatgctgaaaccattggattattatcacaacagtgcagacaactactggagctcagccat
ccagacagtgatcagatcagtaaacgccagtctcagatcgaccggctctacgtgtcattg
aaagatttagtggaagaaaggaagtgccggttggaacagcagtactggctttttcagctg
cacagagaggtggaagaacttgagcaatggattgctgagcgagagatctcagccagctct
accgaactcgggcaggactatgaacatgtcacgatcctacaggaaaagttcactgagttt
tcctcagagacaggaagtatgggtcaggagcgagtgatggctattaatcagatggtggat
gagttgattgattttggacatgcagatgccgccatcattgctgaatggaaggatggggtg
aatgaatcatgggctgaactgatggaactgatggaaaccagagcacaaatgcttgcagct
tcacaccagcttcacaaatttttttctgactgcagagaggtaataacacagatagctgac
aaacaccgcagattacccgaagtacgagagtgccaggatggcacagtaaacactagctca
cttcagagactcatgagcacatttgaacatgacattcagctgttagttggacaggtgaga
cagttacaggaaaatgctgctcagcttcgtaccgtttatgcaggagagaaggcagaagcc
atcgccatgcaggaatatgaagtgatgcgagcatggaaggagctaatcatgtcctgtgag
gaatgccgtgtgcagataaccacagcatcagataaactgcgattcttcagcatagtgcgt
gatcagttgatgtggatggaaagcatcatctgccagatagggacaggagagaaacccagg
gatgtctcatctgtcgaggtgctcatgaattaccatcagggcctcaagagtgaagtggag
gcacgaaataagaacatggtgcagtgtatagagatgggaaagacactgctggctacaaga
aaccaagcatcagatgagattaaagagaaactggagaaagttttggccaagcagagagag
ctgacagagaaatgggataaacactgggaggaactacagcacatgttagaaattcatcag
tttgctcaggaggcagtggtcgcagaatcctggctctcatctcaggaggcgtttttgttc
aatcaggaacttggtcgcagcgtagatgaagtagagcagctcattcgccgtcatgaggcc
ttcaggaaagcagcttcaacctgggaagaaagattcagctcgttacgccgcctcactacg
gtggaaaagatgaaggcagaacaaagtaagctgcctccaactccattgctcggtcgtaag
gtttttctggaccctcaggattcatctccagcacgtagcagcccttcatcccttcacaaa
cagactatttatgagcagggagactattggagtgaacgaaacgtggctcaggcatcgcca
ccacttgcatctcgtagacttggcccaacagtctcaaattatacaccaattgtgagtggt
cctgccacattgctaattcaggaggcaaggaacactggtgtcttgggggtcgctgcaggc
cttggaacggccacagaccataaaagcactcagatcaaaccagtgcaccccattaaagac
gtgaacgtaatggcggaggtggtgcttcaggagccgggatgcagtggaggcagtcgcata
gaattgcaggtggagcagcaacgccctcatgggaaggacttgcgtgttgaacgtcagctt
tctaatgaacagctgattcaagcaagaagagatgagcttcctcaagaagtatggagggaa
cgggcagagagagaaaagaggctagagagacagacatccagtgaacaggaagtatttgaa
actcggcgaaaagacagacatcggcttgagaaacaagaaagcagcgaacatgagacggcc
aaagaaccatcagataggcgatcaggaggaggagagaaacggtctaccttagctgacatc
gtggaacagcttcaagagcgagaagctgcacaggctcgaggtgaaattcctcgcgttcca
aatggagttccagagaagtcgcgtctagatcgaccccgagctcgagaccgaccaaaacca
cgcaggcggccgcggcccaaagatggtacacagggcgagacgcgacgttcgcgatctgct
cctgcccagagcagctcatctgtcccacaaccaccttcccatcatgctcagcgtgagggc
ttcctcttccgcaagttagacatagagagccagaagaaaagctccaacagcagatcttgg
gtgaatctgtactgcatactgaataaaggcgaacttggtttcttcaaggactcaaagaat
ataacatctacgtacaacaatgaaccacgtcttagtctaaacagctgttcctgtgacatc
aaccttggctacaaaaagaagaaaaacgtcttcacacttaaaactaaagatgggagcgag
ttcctgttccatgcaaaagatgaggatgatctaaaagcctggatctcgaatatcaacatg
tgtattggtgaacatgaggatatcactaaatgggggcagtcacatccaactacctcatca
acagacgagggcacacggagggaaggcagcagggctgagaaatctgaccgagccgatagg
ggctctgagcgctcggacaagggtgagaaaatggagaaaaagagcgggaaaaagaaatga
DBGET
integrated database retrieval system
