Silurus meridionalis (southern catfish): 124395805
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Entry
124395805 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124395805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124395805
03036 Chromosome and associated proteins [BR:
smeo03036
]
124395805
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124395805
Coactivators
SAGA/TFTC/STAGA complex
124395805
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124395805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
124395805
NCBI-ProteinID:
XP_046720611
LinkDB
All DBs
Position
13:4813639..4907652
Genome browser
AA seq
1122 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLVGRSGNKAGGAKQHLVGKSLASRASTPS
EQQQQHHHHHYQHHHHHHHHHHLQQHKAGTERGSDPSESTAAATESGVKASTSVSRSHSC
SSSSSSTSPSPSSSSSSPSSKIPAQDGAASSPAAGRRAAAAPAPGSVETSRHYGTRKKRG
GGARGSAAARNLNGAATCAAGVASPPSSAAAAVSMATARANPTTYTVSGASGSVALDKGT
PTIALQRLPSHIVASIAQGRNGTSVSALIQQGSENHSKKAEIDQDKTKADVQQLQPGSVN
SVPSAACITATQSQPQTVSQPQSQSHVLSQPQSQCQTQTQSHVVSKPQSQSQCHTQSQSH
AVSQPQSQPQCNSIPIPCSFPASIPTSTPIPSSIPTSIPKQSQSQPQSQSKVVSQPQSQT
QSISQSQSQSQSQPQSQPQSQTVTQPQTPLQSPSQLQPQTQSQPQHQPTLQPQTQSQPQT
QTQPQSQPQPQLQPQPRPAAPLQRITAPQLIVRPPQQQATIQLPPGFTIPAGMVLVRTEL
GQLMMVPQQALAQAQAQSTLSPRPAAPTTTATFRVTTPQASVSVPTSRVSPAVQNKVVQS
QTLSPAPQTCTTSSSTSTATITTTSTTTTATTTTTTPAVTRAPLAVTTPQQHPAALAPQG
PTLAPPTAAGPAPGATVISQEMQENVKKCKNFLATLIKLASHNSPLPETSRNVKALVQDL
LDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLMNSQQSLTPQTKTTTSLTG
TVAGAVTTGNAPRQPNSTITPPQNIKRTGTIGGQVRMPVVITQTVRMAGAVGKSPVVQVG
KSPSAVSVQLSGTLKNKVNDPGGGSYRDDDDINDVASMAGVNLSEESARILATNSELVGT
QIRSCKDEAFLPTGLLHRRILEMAKKFGVTEVPLEAVNFIAHATQTRLRTVLEKVSFIAQ
HRMDSSKDDEWYEQSSDVRSQLKFFEHLERLEKQRKDEQEREILLKAAKSRSRQEDPEQA
RLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGGTSGNEVSGSSAGSPASS
LSSSRQFHRQRITRVNLRDFIFYLEQERETSRSLLLYRALLK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccctctggaagatatgctgttctcagaggtggacgagaaagcc
gtgagcgacctggtgggctcgttggagtcgcagctcgtcggccgaagcggaaacaaagct
ggcggagccaagcagcatctcgtcgggaaatcgttagcttctcgggctagtactccatcg
gagcagcagcaacaacatcatcatcatcattatcaacatcatcaccatcatcatcatcat
catcatctccaacaacataaagccgggacggagcgaggttcggaccccagtgagagcacc
gcagcggccacggagagcggcgtgaaggcgagtacgagcgtttcgcgttcacactcctgc
tcctcctcctcctcctccacatctccatccccatcctcctcgtcctcctcgccgtcatct
aagattcccgcgcaggatggagcggcgtcttctcccgcggccgggcggagagcagcagcc
gcaccagccccgggctccgtggagacgtcgcggcattacggcacgcggaagaagcgaggc
gggggcgcgaggggctccgcggcggcgcgcaacttgaacggcgccgcgacctgcgccgcc
ggagtcgcgagcccgccgtcgagcgccgcggccgcggtttccatggcgacggcgcgcgcc
aaccctaccacgtacaccgtgtccggcgcgagcgggtctgtcgcgctcgacaaggggacg
cccacgatcgcgctgcaacgactcccgagtcacatcgtggccagcatcgctcagggcagg
aacggcaccagcgtgtccgcgctcatccagcaagggagtgagaaccacagcaagaaagcc
gagatcgaccaggacaagaccaaagcagatgtgcagcagcttcagcctgggagtgtaaac
tctgtcccgagtgctgcgtgcatcacagcgactcagtctcaacctcaaaccgtatcccaa
cctcaatcccaatcccatgtattatctcaaccccaatcccaatgccaaactcaaacgcaa
tcccatgtagtatccaaacctcaatcccaatctcaatgccatactcaatcccaatcccat
gcagtttcccagcctcaatcccaacctcaatgcaactcaatcccaatcccatgtagtttc
ccagcctcaatcccaacctcaaccccaatcccaagtagtatcccaacctcaatcccaaaa
cagtcccaatcccaacctcaatcccaatcaaaagtagtatcccaacctcaatctcaaacg
caatccatatcccagtctcaatcccaaagtcagtctcagcctcaatcccaaccccaatcc
caaacagtaacccaacctcaaactccgcttcaatctccatcccaactccagcctcaaact
caatcccagccacagcatcaacccacgcttcaacctcaaacacaatcccaacctcaaacc
caaacgcagccccaatctcaaccccagcctcagctccaacctcagcctcgacccgcagct
ccactgcagaggatcacggctccgcaactcatcgtccgaccgcctcagcagcaagcaacg
atccagcttcctccaggatttacaattccggcaggcatggtattagtgcggacagagctg
gggcagttaatgatggttccacagcaagcactggctcaagcccaggcccagagcaccctc
tcgccccgtcctgctgcccccaccaccacagccaccttcagagttaccaccccacaggct
tccgtctcggtcccgacctctcgggtgagtccagctgttcagaataaagtggttcagtcg
caaaccctgagtcctgctcctcagacctgcactacttcctcttctacttctactgctact
attactacaacttctactactactactgctacaactacaaccacaactcctgctgttact
agggcgccgttagcagtgacaacgccccagcagcaccctgcagctctggcccctcagggg
cccaccctggctccaccaaccgcagctggccctgctcctggagcaaccgtcatctcgcag
gaaatgcaagagaatgtgaaaaagtgtaagaacttcctggcaacgttgatcaaactcgca
tcccataattccccattgccggagacgtcacgcaacgtgaaagcactggtgcaggacctt
ctggatgccaaaattgagccggaagaattcaccagccggctgcagacggagctaaagtca
tcaccacagccttacctggtgccttttctaaagaaaagcctgccggcgttgcgtttgtcc
ctgatgaatagtcagcagtcactcactccacagactaagaccaccacatctctaacggga
acagtcgcaggggctgttactactggcaacgccccccggcaacccaacagcactattaca
ccgccacagaatattaagaggacagggacgataggaggacaggtccggatgccggtggtc
atcacacagacagtgcgtatggcaggtgctgtagggaagagtccggtggtgcaggtaggg
aaaagcccctcggcggtcagcgtgcagctttcaggcactctgaagaacaaagtcaacgat
cctgggggaggctcctatagggacgatgatgatatcaacgacgttgcgtcaatggccggg
gtgaacttgagtgaggagagtgctcgtatcttagcaaccaactcggagctggtaggcacg
cagatccgttcgtgcaaagacgaggccttcctgcccacgggtctactgcatcggcgcata
ctggagatggctaagaaattcggggtgaccgaggttcctttggaggcagtaaacttcatc
gctcacgccacacagacacggctgaggacggtgctggagaaagtgtccttcattgcccag
catcgcatggactccagtaaggatgacgagtggtacgagcagtcgtcagacgtccgctct
cagctcaaattcttcgagcatttagagcggctggagaagcagaggaaagacgagcaggag
agagagattctcctcaaagcagccaaaagtcgctcgaggcaggaggacccagagcaggct
cgtttgaagcagaaggcaaaagagatgcagcagcaggaactggcccagatgaggcagagg
gacgcgaacctcacagctctcgccgccatcggaccacgcaaaaaacgcaaagtggactcg
cctggaggaacatcaggcaacgaggtgtcggggagctcggcgggttctccagcctcgtcg
ctgtcgtcctcgcgccagttccaccggcagcgaatcacgcgcgtgaacctcagggacttc
atattctacctggagcaggagcgagagacgagccgatctctcctgctctaccgtgctctg
ctgaagtag
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