Silurus meridionalis (southern catfish): 124395808
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Entry
124395808 CDS
T08004
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124395808 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124395808 (sf3b3)
03041 Spliceosome [BR:
smeo03041
]
124395808 (sf3b3)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124395808 (sf3b3)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124395808 (sf3b3)
Spliceosome [BR:
smeo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124395808 (sf3b3)
Complex B
124395808 (sf3b3)
Complex C
U2 SnRNP specific factors
124395808 (sf3b3)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124395808 (sf3b3)
TFTC complex
124395808 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
124395808
NCBI-ProteinID:
XP_046720614
LinkDB
All DBs
Position
13:complement(12789900..12814329)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GADGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGAI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAVCRFANGG
DDWYVLVGVSRDMILNPRSVGGGYIYTYRLVGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDIQESLFWVRYKRNENQ
LIIFADETNPRWVTTACLLDYDTMATADKFGNISIVRLPQNTSDDVDEDPTGNKALWDRG
LLNGASQKADVIVNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgaccttacagcgtgctactggcatcactcatgccatccatggc
aacttctcaggtaccaagcagcaggagattgttgtttcacgaggaaagattctggaactg
ctgcgcccagatgcaaacacgggcaaagttcacacacttctcaccatggaggtgttcggc
ataatccggtccctcatggccttcaggctgactggtggcacaaaagactacatcgtggtg
ggcagtgattcaggtcgtattgttatcctggagtatcacccctccaagaacatgtttgaa
aaggtgcaccaggagacctttggcaagagtggctgtcggcgtattgttccaggccagttc
cttgctgtggatcccaaaggcagagctgttatgataggagcaatagagaagcagaaattg
gtgtatatcctcaatagagatgcagctgctcgtctcaccatctcctcccccctggaagca
cacaaggctaacacgttggtctaccatgtagtgggggtggatgtaggttttgagaacccc
atgtttgcttgtctcgagatggattatgaggaagcagataacgaccccactggggaagct
gcagctaacacacagcaaactctgaccttctacgagctggacctgggactcaaccacgta
gtgcgcaagtacagcgaagctctggaggagcatggcaacttcctcatcacagtgccagga
ggcgctgatggtccaagcggtgtgctcatttgctcagaaaattacattacttacaaaaac
tttggggaccagccggatattcgttgcccgatcccacgcagaaggaatgacctggatgat
ccagaaaggggtatgatcttcgtctgctcagccacacacaaaaccaagtccatgttcttc
ttccttgcccagactgagcaaggagacattttcaaggttaccctggaaacagatgaagag
atggttacggagatcaggatgaaatattttgacaccattccagtggctacagcaatgtgt
gtgctgaagactggcttcctttttgtctcatcggagtttggaaaccattatctgtaccag
attgcccacctgggagatgatgatgaagaaccagaattctcttctgctatgcctctggaa
gaaggagacacatttttctttcagccccgaccacttaaaaacctggtgcttgtggatgaa
caggagaacctttcccccattatgtcctgccagattgcagatttggccaatgaagacaca
cctcagctatatgtggcatgtggtagagggccaagatctactctaagggttcttagacat
ggtctggaggtctcagaaatggctgtttctgagcttcctggtaaccccaatgctgtgtgg
actgtgaggaggcatgttgaagatgagtttgatgcctacatcattgtgtccttcgttaat
gccacgctggtgctgtcaatcggagaaactgtggaagaagtgacagactctggtttcttg
ggtactaccccaactttgtcctgttctctgctgggggaagatgctctagtgcaggtgtac
ccagatggtattcggcatatccgagcagataagcgtgtgaatgagtggaaaactccagga
aaaaagacaattgttcgctgtgctgtgaaccagcggcaggtggtcattgccctgactgga
ggagagttggtctactttgagatggacccgtcaggtcagctgaatgagtacacagagaga
aaggagatgtctgcggatgtggtgtgcatgagccttgcgaacgttcctccgggtgaacag
cgttctcggttcttggcagtgggcttggtggataacacagtgcgcatcatctctctagac
ccctcggactgtctgcagccactgagtatgcaggctttgccagcacagccagaatctctg
tgtatagtggagatgggaggtgtggagaaacaagatgaattgggagagaaaggtgccatt
ggcttcctctaccttaacattggcctgcagaacggtgtgttactccgtactgtgctggac
ccagtgactggagacctgtctgacactcgcacacgctacctcggctctcgaccagtaaag
cttttcagagtgcgaatgcagggccaagaggctgtattggccatgtccagccgatcatgg
ctgagctactcataccagtcacgtttccatctgacaccactttcctatgaaaccctagag
tatgcttcagggtttgcctcagagcagtgtcctgaaggcattgtggccatctctaccaac
acactgagaattctggctctggaaaagctgggtgctgtgtttaatcaggtggcctttcct
ctgcagtacacaccacgcagatttgttattcacccagagaccaacaacttggtcctcata
gaaacggaccacaatgcctataccgaagccaccaaggcccagcgcaagcaacagatggca
gaggaaatggtggaggctgcaggagaggatgaaagggagctggctgcggaaatggctgcg
gcctttttgaacgagaaccttccggaatcaatttttggtgccccaaaagctggctcagga
cagtgggcctcactggtacgcttgatcaaccccattcagggcaacaccctggatttggtt
cagctggagcagaatgaagctgcctttagcgtggcagtttgtcgctttgctaatggaggt
gatgactggtatgtgttagtgggtgtgtcaagagacatgatccttaacccacgctcagtg
ggcggtggctacatttacacctaccgtctggttggaggtggtgaaaagctggagtttgta
cacaagaccccagtggaagatgttcctctggccatcgcccccttccagggtagagtgttg
gtgggagtgggcaaactgctgcgcatctacgaccttggcaaaaagaagctgcttcgcaaa
tgtgagaacaagcatgttcctaacctggtgacggggatccatactatcggccagcgtgtg
attgtttcggacatccaggaaagcctattctgggtgcgctacaagcgcaatgaaaaccag
ctcatcatctttgctgatgagacaaacccacgctgggtaacgactgcctgcctgctcgac
tatgacaccatggccacagctgacaagtttgggaatattagcattgttcgtctcccacaa
aacaccagtgatgatgtagatgaggaccccacagggaacaaagcattgtgggacagaggt
ctgctcaatggagcctcccaaaaggctgatgtaattgttaactaccacataggagaaacg
gtcctgtcactgcagaagaccacgctcatccctggaggatccgagtctctcgtgtacacc
actctgtcaggtggcattggcattctcgtgcccttcacatctcatgaggatcacgacttc
ttccagcacttagaaatgcacatgcgctcagagttccctccactttgcggccgagaccat
cttagcttccgctcctattacttccctgtgaagaatgtaattgatggagatctatgtgag
cagttcaactctatggatccccataagcagaaaagtgttgctgaagagttggaccgcaca
ccaccagaagtgtcaaagaaactggaagacattcgcacacgttacgccttttaa
DBGET
integrated database retrieval system
