KEGG   Silurus meridionalis (southern catfish): 124395887
Entry
124395887         CDS       T08004                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03420  Nucleotide excision repair
smeo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124395887 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    124395887 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smeo04121]
    124395887 (ddb1)
   03400 DNA repair and recombination proteins [BR:smeo03400]
    124395887 (ddb1)
Ubiquitin system [BR:smeo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     124395887 (ddb1)
DNA repair and recombination proteins [BR:smeo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      124395887 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      124395887 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 124395887
NCBI-ProteinID: XP_046720730
LinkDB
Position
13:28633713..28650885
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEIGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLKEKEFSKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMDGRLFMLLLEKEELIDGSMVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGKE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QESKSLISEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVAC
LDITPLGESSGESGLCAVGLWTDISARVLRLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDLETGTLTERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDVNGTTAPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCKLGKDPAIYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSIVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLMDLQNRLNKVIKSVGKIEHSFWRSFNTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtaacggcgcagaaacccaccgcggtgaacgcctgcatcacc
ggtcacttcacgtcagcggaggatcttaaccttctcatagcgaagaacacacgtctggag
atctatgtggtcacggcggagggattacggccggtcaaggagatcggcatgtacggcaag
attgccgtcatggagctctttagacccaaaggtgaaagtaaggatctcctgttcattctg
acggccaaatacaacgcctgtatcttggagtacaagcagaatggagatagtattgatatc
atcactcgtgctcatggaaatgttcaggatcggattgggcgtccgtcagagaccgggatt
atcggtatcgttgaccccgagtgtcgtatgattggtctgcggctctacgacggtcttttt
aaagtcatcccattggatcgggaaaaccgagagctcaaagccttcaacattcgtctggag
gagctgcaggttatagacgtgcacttcctgtacgggtgccaggctcctaccgtctgtttc
atatatcaggaccctcagggacgtcacgtgaagacgtatgaggtgtctctgaaagagaag
gagtttagtaaggggccctggaagcaggagaacgttgaagctgaagcctccatggttatt
cccgttcctgagccgtttggtggcgctataatcatcggtcaggagtccatcacgtatcac
aacggagataaatacctggccatcgcacctccgacaatcaagcaaagcacgatcgtgtgt
cataaccgcgtggatccgaacggctctcgctacctcctgggtgacatggacgggaggctg
ttcatgctcctgttggagaaagaggaactgatcgatggatccatggtgctgaaagatcta
cgggtggagctgctgggagagacatccatcgccgagtgtctgacctacctggataacgga
gtcgtgtttgtaggctccagactcggagattctcagctggttaaactgaatgtggacagt
aacgaccagggctcctacgtggcagttatggaaacatttaccaacctggggccaatcgtg
gacatgtgtgtcgtggatctggagcggcaaggacagggccagctggtcacctgctccggg
gcgtttaaagaaggttccctgaggatcattcggaatggaataggaatccatgagcacgcc
agtatcgacctgcctggtatcaaagggttatggcctcttcgctcggaggcgggcaaagaa
actgacgacatgctggtgctttctttcgtcggacaaaccagagttctgatgctgagcgga
gaggaggtggaggaaaccgagcttcccgggtttgtagataaccagcagacgttcttttgc
ggcaatgtggctcaccagcaactcattcagattacctccggttcagtgcgattggtcacg
caggagagcaagtctttaattagcgaatggaaagaacctcagggcaggaacatcagcgtg
gctgcttgcaactccacccaggtggtgctagcggtgggacgagtactctactatctgcag
atcctcagcggagaactcaagcagataagttcgacagagatggagcacgaggtagcgtgt
ttggacatcactcccctcggcgagagtagcggagagtccggcctgtgcgccgtgggcctg
tggaccgacatctcggcccgagtcctccgtctgccctgcttcagccctctgcataaggag
atgctgggtggagagatcattccacgttccatcctgatgaccacgtttgagggcagtcat
taccttctctgtgctctgggagacggcgcgctgttctacttcggcctggacttggagacg
ggcactctgactgagaggaagaaggtaactctggggactcagcccacggtgctccggacc
ttccggtccctttccacctccaatgtgtttgcatgctcagacagacccaccgtcatctac
tccagcaaccacaaactcgtcttctccaacgtcaacctcaaagaggtcaattacatgtgc
cccctgaactctgagggctaccccgacagcttggctctggccaataacagcactttgacc
atcggtaccattgatgaaatccagaagcttcacattcgcactgtacctctgtatgagtcc
cccaagaggatctgttatcaggaagtgtctcagtgtttcggtgtgctctccagtcgagta
gagatgcaggatgttaatggaacaacggctccggtacgccccagcgccagcactcaggct
ctgtccagcagtgtgagctccagtaagctcttccccagcagcacctccccacatgagacc
tccttcggtgaggaggtggaggtgcacagcttactggtggtggatcagcacacctttgaa
gtgcttcatgcccaccagtttctgcccagtgagtacgctctgagtctggtatcctgtaaa
ctgggcaaagatcccgccatctacttcatcgtgggcaccgccatggtctaccccgaggag
gcggagcctaagcagggacgcatcatcgtcttccattacactgatggtaaactgcagact
gtagcggagaaagaagtgaaaggtgccgtttactcgatcgtggagtttaacggcaaactg
ttggccagcatcaacagcaccgtgcgtctgtacgagtggacagcagaaaaagagctgagg
acagagtgtaatcactacaacaacatcatggctctgtatctgaagaccaaaggggacttc
atcctggtaggagatctgatgaggtcggtgctgctgcttgcgtacaaacccatggagggg
aacttcgaggagatcgctcgggattttaacccgaactggatgagtgcggtggagattttg
gacgatgataatttcctgggtgcagagaacgccttcaaccttttcgtgtgccagaaagac
agtgctgccaccactgatgaggagcgtcagcatttacaggaagtgggcgtgttccatctt
ggcgagtttgtgaacgtgttctgtcacggttccctcgtgctgcagaacctcggcgagagc
tccactcctacacagggttccgtcctgttcggaaccgttaacggaatgatcgggctggtg
acgtctctgtcagagggatggtacagtcttctgatggatttacagaatcgtctcaacaag
gtcatcaagagcgtgggaaagatcgagcacagcttctggagatcattcaatacggagagg
aagactgagcaggccacgggtttcatcgacggagatctgatcgaaagctttttagacctg
ggacgagccaagatgcaggaagtggtcagcacactgcagattgatgacgggagcgggatg
aagcgtgaggccacggtggatgaagtcattaagatagtggaggaactcaccaggatccac
tga

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