Silurus meridionalis (southern catfish): 124396137
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Entry
124396137 CDS
T08004
Name
(RefSeq) latent-transforming growth factor beta-binding protein 4 isoform X1
KO
K08023
latent transforming growth factor beta binding protein 2/3/4
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124396137
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
124396137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF_3
EGF
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_Teneurin
EGF_2
Motif
Other DBs
NCBI-GeneID:
124396137
NCBI-ProteinID:
XP_046721102
LinkDB
All DBs
Position
13:complement(19502750..19562231)
Genome browser
AA seq
1817 aa
AA seq
DB search
MFRTLIVLLCCASALLHVSPAAERIKVLFTPTICRLRCSNGHCTNYCERGNITTLYSNED
ATHSSGFRVFLCPLLCKNGGVCIQKDRCLCPLNFTGKFCHIPAPSSFSSVNEIEKIPSRA
TSQGLMHSEYVLPLQNRQQNLTNGSPMVTVRVHHPPEARVKIHQVVKVTSSSGSETMIRS
SRLSGSSGNSDHSSMFLADRAEDQPALVQAQTLRGDSIYTEDSVFKYCFREVRNGQCSSP
LPGLHSQETCCKRNGIAWGIKDCTLCPPTGSSTTGEKSCPHGFERVNGTQCVDINECAQQ
GFCENGKCVNTRGSYSCVCKPGFLLDASRGICISQRVISDEKDQCFRVVSQSVCSLPILK
NITKQICCCSRVGKAWGRKCEACPYFGSVEFKEICPAGPGYHYSPNTLKLNQRVSEPHSP
SLISHTNRTSTTVSRYDTSLLQSTTRNEPPPNQRPQSTRTQSATISHNVRIQQSSTGQRQ
PITSEVFIIQNEPQLSQHRQTGGLASTTSQPSKEFFHVIRTHTSRPLVFQPHYPAIVSLP
IPSTARPPPPRSDKRVCEVNPQVCGPGRCINKAGGKHTCLCNSGFILNSQAGHCQDVNEC
LLSPRPCLAGHCENTVGSFRCVCPSGFQSNSQQSLCSDIDECRLIPNPCTNGRCENTLGS
FRCVCRTGYKLQNNTCADIDECDDPLRCPGKECINTQGSYSCVLCKPGFGLLNGQCSDID
ECRQRPALCSNGHCENMPGSYRCVCNIGFKLQGNTCSDVNECEDSLQCPGQGCINTLGSY
RCVSCGPGFVITNRKCTDIDECRQIPAPCSNGRCENTLGSYRCVCHTGYKLHDNKCTDVN
ECENPLQCRGQVCVNTPGSYRCTACGAGLTFHNGQCTDVDECAQNTRLCANGRCENTPGS
FQCVCLPGFRLNANTCTDVDECAQNTRLCPNGRCENTPGSFQCLCLPGFRLNANTCTDVD
ECAQNTRLCPNGRCENTPGSFQCVCRPGFRLEANTCTDVDECENELQCPGQKCVNSVGSF
KCVSCSPGFEIINGQCQDVNECSQKPSPCTNGRCENTPGSFTCVCRAGFMLKGNTCTDID
ECGSSGICGPMSVCVNTDGSYRCECSPGFRATAPGRQCRDVNECLEGEFCFPRGECVNTE
GSYMCVCSQGYHTSANGTVCNDVDECARDGVCQDGRCTNTDGSFTCHCKTGFTANPEKTA
CLDVDECVDSGGSVCGSQRCENTIGSFHCFITCEPGYSITARGECVDINECANESVCGHH
MYCRNLIGTYQCHCDQGYESARDGLSCVDINECAVMAGVCGAARCWNVEGSFMCECEKRE
EVYDSNTQQCVTTGSRSGSSSSSSSSSSSSSSSSSSPQPQPGKKIECYSNVDERDQCAVL
SSNVTAQECCCTVGRAWGHNCQKTLCPQVGTPEFQAMCPSGRGYVTNAVGAFSYRDVDEC
KLFNASLCKGGVCVNNIPGYSCYCPSGYYYAEHLMECVDNNECESGEMCPGGLCVNTLGS
YYCTCEPPLVLDGTQRSCVSNSSLTMDENPLICWQHVTADLVCQRPLQGIQMTFTDCCCL
YGEAWGLQCALCPRRDDEAYETLCSAYGPPPNSPRYAERFGPLPQGRGGYRPPYGGPIYP
EIPSSDYNDYSAGTERRSGFRTQPADSYPPFMTPELGSRPYYEEDDYDSAVAPPFAPDPR
SYGSRFIAEDGEDEDESWRGHAPFPPFTDRRPGSERPRRVYERRYESFAGLSDDECGILQ
GCENGRCVRVGEGYTCDCYDGYQLDIASMTCIDVDECEDPTFPECINARCVNTEGSYRCV
CLRGFIMSRRPNYCIMV
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggacactgattgtgctgctgtgttgtgcgtcggcactgctgcatgtgtctcca
gcggccgagaggattaaagtgctcttcacgccaaccatctgcaggctgcgctgctccaac
ggacactgcaccaactactgcgaacgaggcaacattaccacactgtacagcaatgaggat
gccacacactcgtccggcttcagagtgtttctgtgccccttgttgtgtaaaaatggaggt
gtgtgcattcagaaagatagatgtctctgtcctttgaactttactggaaaattctgccat
atccctgcaccttcatctttctcctctgtcaatgagattgagaagataccttcaagggca
acaagtcaggggctgatgcattcggagtacgtccttcctttacagaatcgacagcagaac
ctcactaatggatctcctatggtgacagttcgagtccatcaccctcctgaggcaagagtg
aagattcaccaggtggtgaaggtcacttcaagttcaggctcggagaccatgattcgatca
tcaagactctcaggttccagtggcaacagtgatcatagcagtatgtttctggcagacaga
gcagaggatcaacctgctcttgtccaggcccaaacattaaggggagactctatctacaca
gaggattctgtgtttaaatattgcttcagagaagttcgcaatggccagtgcagttctcca
ctgcctggcctccacagccaggaaacatgctgcaagagaaatggtatagcatggggaata
aaggactgtacactctgccctccaacaggaagtagcacaactggagagaaaagctgtccg
catggttttgagagggttaatggtacacagtgtgtggatattaacgagtgtgcgcagcag
ggtttctgtgagaacgggaagtgtgtgaacacccgcgggagctacagctgtgtttgcaaa
cctggtttcttattggacgcctcacgtggcatctgtatctcccagagagtcatttcagac
gagaaggatcagtgtttccgtgttgtctctcaaagcgtctgctctttgcccattctgaag
aacatcactaagcagatttgctgctgcagtcgcgtcggcaaagcctggggaaggaagtgt
gaggcgtgcccttattttggatctgttgaatttaaggagatttgtcctgctggtcctggc
taccattactcacccaacactctaaaactgaatcagagggtttcagaaccacatagccct
tccttgatctctcacaccaatcgtacttcaacaacagtgtctagatacgacacatcatta
ttgcagtcgacaacaagaaacgaaccaccacctaatcaaagacctcaatctacgaggact
caatcggcaactatcagccataacgtcaggattcagcaatctagtactggtcagaggcag
ccaatcacatcagaagttttcatcattcagaatgaaccacagctgagtcagcacagacaa
actggaggtcttgcttcaactaccagccaaccaagcaaagaatttttccacgtgattagg
acccacacaagtaggccattggtttttcaaccccattatcctgcaatcgtatctctccca
attccctcaacggctcgtccacctccacccagatcagacaagcgtgtgtgtgaggttaac
cctcaggtttgtgggcctggtcggtgtatcaataaggctgggggaaaacacacatgtttg
tgtaattctggattcattctcaattctcaagcaggtcattgccaagacgtaaatgaatgt
ttgttgtctccgaggccatgtttggctggtcactgtgagaacacagtgggaagttttcgc
tgtgtgtgtccttcaggctttcagagtaattcccagcaaagcctgtgctcagatattgac
gagtgccgtctgatccctaacccttgcactaatgggcgctgtgagaacacgctcggcagc
ttcaggtgtgtgtgcaggacaggatacaagctgcagaacaacacatgtgcagacattgat
gagtgtgatgacccgctccgctgtccagggaaggagtgcataaatactcagggttcctac
agttgtgtgctctgcaaacctggatttggtctccttaatggccagtgctcagatattgat
gagtgccgtcagcgtccggccctttgctctaatggccactgtgagaacatgccaggcagc
tacagatgtgtgtgtaatataggcttcaagctacagggtaacacctgctcagatgtaaat
gaatgtgaggactctctgcagtgtcctggtcagggatgtattaatactctgggttcatac
agatgtgtgtcttgtggccctgggtttgtaataaccaacagaaaatgcacagatattgat
gagtgtcgtcagattcctgccccttgttctaatggtcgctgtgagaacacacttggcagc
tacagatgtgtgtgtcatacagggtacaagcttcacgataacaaatgcacagatgtaaat
gagtgtgagaaccctctgcagtgtcgtggtcaggtgtgtgtgaacacaccaggttcatac
aggtgcacagcctgtggtgctggattaacctttcataacggtcaatgcacagatgtggat
gagtgtgctcaaaacacacgtctctgtgctaacggacgctgtgaaaatacccccggaagt
ttccagtgtgtatgtttacctggattcagattgaatgcaaacacctgcacagatgtggat
gagtgtgctcagaacacacgtctctgtcctaacggacgctgcgaaaatacccctggaagt
ttccaatgtttatgtttacctgggttcagattgaatgcaaacacctgcacagatgtggat
gagtgtgctcagaacacacgtctctgtcctaacggacgctgcgaaaatacccctggaagt
ttccaatgtgtatgtcgacctggatttagactggaggcaaatacctgcacagatgtggac
gagtgtgagaatgaacttcaatgtccagggcaaaagtgtgtgaattctgttggctctttt
aagtgtgtttcatgcagtccaggcttcgagatcattaatggccagtgtcaagatgtaaat
gagtgcagtcagaaaccatctccatgcactaatggtcgctgtgaaaacactcctggcagc
ttcacatgtgtgtgtcgtgctggattcatgctgaaaggaaacacctgcacagacattgat
gagtgtgggagctccggaatatgtggtccaatgagtgtgtgtgtgaacacggacggctcc
tacaggtgtgagtgttcacctgggtttcgggctacagcacctggacgccagtgccgagac
gttaacgaatgtttggagggtgagttctgcttccctcgaggagagtgtgtgaataccgag
ggctcgtacatgtgtgtgtgctctcaaggttaccataccagtgccaatgggactgtctgt
aatgatgtggatgagtgcgcccgggatggagtgtgtcaggatgggcgctgcaccaacact
gatggctcgtttacgtgtcactgcaaaaccggctttactgccaatcctgagaaaacagcc
tgcctggacgtggatgagtgtgtggactctggtgggagtgtgtgtggttctcagcgctgt
gagaacaccattggctcctttcactgcttcatcacctgtgagcctgggtacagcattaca
gctagaggagagtgtgtggacattaacgagtgtgcaaatgagagtgtgtgtggccatcac
atgtactgtcgaaatttgattggaacgtatcagtgtcactgtgaccagggctacgagtca
gcacgagacggactttcctgcgtggacattaatgagtgtgcagtgatggcaggtgtgtgc
ggtgcggcacgctgttggaatgttgaaggttcatttatgtgtgaatgtgagaaacgggag
gaagtgtatgactcaaatacacaacagtgtgtgaccacagggtcaaggtcggggtcatcc
tcctcctcctcctcctcatcatcatcatcatcatcatcatcatcatcaccacaacctcag
ccaggaaagaaaatagagtgctactcaaacgtggatgagagggaccagtgtgcagttctg
tcttctaatgtgactgctcaggagtgctgctgtactgtgggacgagcctgggggcacaat
tgtcaaaagaccctctgcccacaagttggaacacccgaattccaagcaatgtgtccgagt
ggacgtggctatgtgactaatgcagtaggggccttcagctatagggacgtggacgagtgt
aaactcttcaacgcgagtttgtgcaaaggtggtgtgtgtgtaaacaacatccctggctac
tcgtgttactgccctagtggatactactatgctgaacacttaatggagtgtgtagataat
aatgagtgtgagagtggggaaatgtgtccgggtggtctgtgtgtgaacacacttggttca
tattactgcacatgcgagcctcctctggtgctggacggaacccagcgctcctgtgtcagc
aattcaagcctcactatggatgagaatcccttaatctgttggcagcatgtaacagctgat
ttggtgtgtcagagacctttgcaaggaattcaaatgacatttaccgactgttgctgttta
tatggagaagcatgggggctgcagtgtgcactgtgtccgcgcagagatgacgaggcatat
gagacattgtgcagtgcttacggtcctcctccaaactctcctcggtatgcggagcgtttc
ggaccacttccacagggaagagggggctacagaccaccgtatggtggtcctatttacccg
gagataccatcttctgattacaatgactacagtgcaggaacagaacgtagatctggattt
aggacacagccagctgactcatatccccccttcatgactcctgaacttggctctaggcct
tattatgaagaggacgattatgactcagctgttgcacctccattcgcaccagatcctcga
tcctatggctcacgctttattgctgaagacggtgaagatgaagatgagtcatggagaggc
cacgcccctttcccacctttcactgatagaagaccaggaagtgaaagaccacggagagtc
tatgaaaggcgttatgagtcatttgctggcctgtcagatgatgagtgtggtatactgcag
ggctgtgaaaatggccgctgtgtccgtgtaggggaaggatacacctgtgactgttatgat
ggataccagctcgatatcgcctctatgacatgtatagatgtggatgagtgtgaggaccca
acctttcctgaatgtataaatgctcggtgtgtaaacacagaaggctcatatagatgtgtg
tgcctgaggggattcatcatgtcacgcagaccaaactactgcataatggtttag
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