Silurus meridionalis (southern catfish): 124396214
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Entry
124396214 CDS
T08004
Symbol
tsen34
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124396214 (tsen34)
Enzymes [BR:
smeo01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
124396214 (tsen34)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
124396214 (tsen34)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
124396214
NCBI-ProteinID:
XP_046721254
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All DBs
Position
13:complement(6548804..6552495)
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AA seq
317 aa
AA seq
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MDWNTEGSTEADEKSPESREVVMVKSDGEKVENQTVTISMCGSTPLLWRVAEIKKCREEV
GVIGSLVGSLARQPRQNVRLGRPLEILQEEARLLEETGKATALKHKELSEHKESRSDAVK
LYHARLERSYVEQCSLALEDKKAVLQRVINEKQNDHKGNAGAEQAVRERLESLEKSFSFP
RSAMAVQLCTARAGFSHCPEEHAFLAADWPRLRDKRSETRFQVYKDLRSKGFYLTAAGKF
GGDYLVYPGDPLRFHAHFIALCLPMDEKLPVCDVLAIARLGSNVKKTVLLCSPQDISEEE
EVGEKVVYSSLQWSGMV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggattggaatacagagggaagcaccgaggctgatgagaaatctccggaaagcagggag
gttgtgatggtgaaaagtgatggagaaaaggttgagaatcagactgtaaccataagcatg
tgtggatctacgcctttgctgtggagggtggctgaaatcaagaagtgtcgagaagaggtt
ggggtgatcgggtctcttgtggggtctttggcaagacagccaaggcaaaatgtcagattg
ggaagacctctagaaattctccaggaagaggccaggctgctggaggagactggaaaggca
actgctttaaaacataaagagctctctgaacataaagagagtcgttcagatgcagttaag
ttgtaccacgccagacttgagcggagttatgtggagcagtgttcgcttgccctggaggac
aagaaggctgtactacaaagagtaataaatgagaaacagaatgatcacaagggtaatgca
ggagcagagcaggcggtaagagagcgacttgaatctttggaaaagagcttctcatttcct
cgttctgccatggcagtccaactctgcactgctcgggccggcttcagtcactgtcctgag
gaacatgcttttttggctgccgattggccaagacttagagacaagcgctcagagacgagg
ttccaggtttataaggatcttaggagtaaaggcttctacctaactgcagcagggaagttt
ggaggagattatctggtctatccaggtgatcctctccgctttcacgcccacttcattgcc
ctgtgtttgcctatggatgaaaagttaccggtttgtgatgttcttgctatagcaaggctt
ggatccaatgtaaagaaaacagtgttactttgctcaccacaggacatcagtgaggaagag
gaagtaggagaaaaggttgtgtattcatctctgcagtggagtggaatggtatag
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