Silurus meridionalis (southern catfish): 124396367
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Entry
124396367 CDS
T08004
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124396367 (prdm1b)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
124396367 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
zf-met
STL11_N
zf-C2H2_6
Zf-C2H2_ZNF451
B129_C2H2-zf
zf-C2H2_15
zf-MYST
Zf-C2H2_ZNF451_C
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
124396367
NCBI-ProteinID:
XP_046721428
LinkDB
All DBs
Position
14:23294282..23305331
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AA seq
665 aa
AA seq
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MSVNFFYHKKFREGPTATTVSQFQPAWEDEMKEESCLRNMSEWCDVDFALNCTYIVRDQP
FEPEVELPSAMTSIPSNLTFQYTSDHEIYSGQHLHHFIDGYDVQRSKWMRFVNSACSPAE
QNLVTYQNVPDVFFYAIRPVETQREMLVWYSPEFTRRLSGQAEDQPESMKPKHFGADMRE
ADLQKHCLPQWTCHPKHPSQPYSLHSPKELTKDEKDEVEDADEKIDVESIEQDTPPNTPD
QHLMKSSRRFPQESTHKSHPELVSQSHHDPPLHPQNYYSPREDSTIYPPLPHNYHFLPPF
DPHSQLILSPYTPTVPSMPPPRGPLQYGNMLPCEALPFPAMSQPGLFPVNRPYPSLHPYT
SLEKRPTNTSPLQGAPATPELSPLMKHSPGPEHLCEEAINLSLASTPKISSLKSPLPSVS
PQGPGYKSLPYPLKKQNGKIKYECNICFKTFGQLSNLKVHLRVHNGERPFDCKLCKKSFT
QLAHLQKHHLVHTGEKPHECQVCQKRFSSTSNLKTHLRLHSGEKPYQCKVCATKFTQYIH
LKLHRRMHSSGERPHPCPLCHRGFLHHFSLRLHRRSGCCHANSQPESSELRNAAEILERF
DVSAEAEALAENSSEAEVEATLEKWLELEDQPKPSYFKASELLKTPGQWQDRASVVRFGG
EERVH
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcaattttttttatcataaaaagttcagagaaggaccaacagcaaccacagtg
agtcaattccagcctgcatgggaagacgagatgaaggaagagtcgtgcctcaggaacatg
agtgagtggtgtgacgtggatttcgccctcaattgcacttacattgtccgtgaccagccg
tttgaacctgaagtcgagcttcccagcgccatgacttccatccccagcaatctgacattc
cagtacacctctgaccacgagatctactcgggtcagcaccttcaccacttcattgacgga
tatgatgtgcagcgcagcaaatggatgcgttttgtaaactcggcatgttctccggccgag
cagaacctggtgacctatcagaatgtccccgacgtcttcttctatgccatcagacctgtg
gagacccagcgtgagatgctcgtgtggtacagtcccgagttcaccaggaggctctcggga
caggcggaagaccaaccagagagcatgaagcccaagcactttggagctgatatgagagaa
gctgacctccaaaagcactgtctacctcagtggacctgccaccccaaacatccatcacaa
ccttacagcctccacagtccaaaagagctaacaaaggacgaaaaagacgaggttgaggac
gctgacgagaagattgacgtcgagtccattgagcaagacacgccccccaacactccagat
cagcacctgatgaaatcgagtagaaggtttccacaggaaagcacacacaaatcacatcct
gagcttgtctcccagtcacaccacgaccctccactacacccccaaaactattacagccct
cgggaagattcgacaatttaccctcctctgccacacaactaccatttcttgcctccattt
gaccctcattcccaactcattctgagcccttacacacccaccgttccctctatgccgccc
cccagaggaccacttcaatacggcaacatgctgccatgtgaagccttgccgtttcctgca
atgtctcaaccaggcctgttccctgttaatcgtccttatccatcgcttcatccgtacacc
agtctggagaaaaggccaacgaatacatcacctctccagggtgccccggccacccccgaa
ttatcacccctcatgaagcattctccagggcctgagcatctgtgcgaggaggccatcaac
ctcagcttagcttctacaccaaaaataagctctctgaaatcgccattaccatcggtgtca
ccacagggtccggggtacaagtcacttccgtacccgttgaagaaacagaatggaaagatc
aagtacgagtgcaacatctgctttaagaccttcggccagctgtccaacctgaaggtgcac
ttgagggtgcataatggagaaaggccatttgattgtaagttgtgtaagaagagcttcacc
cagctggctcacctacagaaacaccatcttgtccacactggagaaaaacctcatgagtgt
caggtgtgccagaagcgttttagcagcaccagcaacctgaagacgcacctgcgcttacac
tcgggagagaagccctaccagtgcaaagtgtgcgccaccaagttcacgcaatacattcac
ctgaagctacaccgccgcatgcacagttcaggagagcggccgcatccttgcccgttgtgc
catcgtggtttcctccatcacttctccctcaggctgcaccgacgctcagggtgctgccat
gccaattcccagcctgaaagttcagagctgaggaatgcagccgagatcctcgagcgattc
gatgtcagcgctgaggctgaagctctcgccgagaattcctctgaggccgaagttgaagcc
accctggagaaatggctcgagctggaagatcaacccaaacccagctactttaaagcctcc
gaactgttgaagaccccaggacaatggcaggacagggccagtgtggtgcgtttcggtggt
gaagaaagagtccactga
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