Silurus meridionalis (southern catfish): 124396603
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Entry
124396603 CDS
T08004
Symbol
coro1a
Name
(RefSeq) LOW QUALITY PROTEIN: coronin-1A
KO
K13882
coronin-1A
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124396603 (coro1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124396603 (coro1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124396603 (coro1a)
04147 Exosome [BR:
smeo04147
]
124396603 (coro1a)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Phagocytosis
Coronins
124396603 (coro1a)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
124396603 (coro1a)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124396603 (coro1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1899
WD40
WD40_4
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
ANAPC4_WD40
WDCP
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Trimer_CC
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
eIF2A
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_HPS5
BLOC1_2
Beta-prop_NUP159_NUP214
Beta-prop_Nup120_160
Beta-prop_SPT8
DUF1664
TolA_bind_tri
Motif
Other DBs
NCBI-GeneID:
124396603
NCBI-ProteinID:
XP_046721705
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All DBs
Position
14:1000004..1008107
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AA seq
456 aa
AA seq
DB search
MSRKVVRTSKFRHVFGQALKADQCYDDIRISQMTWDSNFCSVNPKFVAMIVDASGGGAFI
VLPLSKTGRIDMSQPTVCGHTGPVLDIEWCPHNDNIIASGSEDCSVMIWEIPDGGLMTPL
KEPVVKLDGHSKRVGILSWHPTAHNVLMTAGCDNVVILWNVARGEAMVRIDSVHSDMIYS
ACWNRDGSRILTSCKDKKLRVFDPRKGSVIAEKDKPHEGSRPVRAVFVSEGKILTTGFSR
MSERQVALWDPNNFSEPLTLQELDTSSGVLLPFFDPDTGIVYLCGKGDSSIRYFEVTDEA
PYVHYLSMYSSKESQKGMGYMPXRGLEVNKCEIARFYKLHERKCEPIVMTVPRKSDLFQE
DLYPDTIGPEPSVDADDWFAGKEGKPVLISLKEGFTATTKNKEFKVIKSLMSTTVSSGGH
GHGNGGDVQALQKEVKELREMVEQLTKRMSELESKS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaaagtcgtcaggaccagtaaattccgccacgtcttcggacaggccttgaag
gcagaccagtgctatgatgacatcaggatctctcagatgacatgggacagcaacttctgc
tccgtcaaccccaaattcgtggccatgatcgtggacgccagcgggggaggagccttcatc
gtccttcctctcagcaagacgggacgtatcgatatgtctcagcccaccgtctgtggacac
accggacccgtgctggacattgagtggtgtccacataacgataacatcattgccagcggt
tctgaggactgcagcgtgatgatctgggagattcctgatgggggtttaatgactcctctg
aaggagccagtggtgaagttggatggtcactcgaagcgtgtggggatcctcagctggcat
ccgactgcacataacgtcctcatgactgcagggtgtgataacgtggtgatcctgtggaac
gtggctcgcggcgaggccatggtgcggatcgactccgtacactctgacatgatctacagc
gcctgctggaacagagacggctcgcgcatcctcacgtcctgcaaggacaagaagctgcgt
gttttcgatcctcgtaaaggcagcgtcatcgccgagaaggataagcctcatgagggctct
aggccggtgcgagccgtgttcgtgtccgaagggaagatcctgaccacggggttcagccgt
atgagtgagaggcaggtggcgctgtgggacccgaacaacttctcagagccactcactctg
caggaactcgacaccagcagtggtgttttgctgccattctttgatcctgacacaggcatc
gtttacctgtgtggaaagggtgacagcagtattcggtactttgaggtgacagatgaggcg
ccgtatgtgcattatctgtccatgtacagcagcaaagagagtcagaagggaatgggttac
atgccanaaagaggactggaggtcaataagtgtgagatcgccagattttataaactgcat
gagagaaagtgtgaacccatcgtcatgactgtaccacgcaagtccgacttgtttcaggag
gacctgtaccccgacacaattggtccggagccgtcggtcgatgctgatgattggttcgcg
ggtaaagaagggaaaccagtcctgatctctctgaaggagggcttcaccgccaccaccaag
aacaaagagtttaaagtcatcaagagtctcatgtccactacagtgtcctccgggggacat
ggacacggcaacggaggggatgttcaggctctgcagaaagaggtgaaggagttgagggag
atggttgagcagttgacaaagcgaatgagcgagttggagagcaaaagctga
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