Silurus meridionalis (southern catfish): 124396610
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Entry
124396610 CDS
T08004
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124396610 (rbbp6)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124396610 (rbbp6)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
U-box type E3
124396610 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
124396610
NCBI-ProteinID:
XP_046721715
LinkDB
All DBs
Position
14:18524385..18543025
Genome browser
AA seq
1768 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITVSELKRQIMGREKLKAADCDLQITNAQTKEEYTDD
VALIPKNSSVIIRRIPIGGVKATSKTFLIDRSEQSVGPSKAIDDSPSITLAQLSKTANLA
EANASEEDKIKAMMSQSNHDYDPIHYTKKMVGPPPPNYTCFRCGKSGHYIRNCPTNGQDK
SFEAPQRIKKSTGIPRSFMMEVDDPNIKGAMLTNTGTYAIPTIDAEAYAIGKKEKPPFVP
QEQSSSSDDDDPVPDELLCLICKDLMTDAVVIPCCGNSYCDDCIRTSLLESEEHICPTCN
QSEVSPDALIANKFLRQAVNNFRNETGYTKRIRKAAAQSSTPAPQPQPRVQRPVQPLKLL
NSRQQDPLRARTPPQNPPAAVVPPAAVPQPPAAVTPPRAVTPPTAVTQQSSATPPEVDAS
PAIETGSGPPAPALSPPQQPPKQEDVVLPKEPEIQLKPLVLPDSLLPTPIIPKGPHISLM
NQPHLHPLPLPLPRPVSGPLRPGAPRLPAVRPVWDPSPGRGRPLPNDRHQRAPVLPVQPP
PVAPALFPPSLFPPPQHTIPHPSSVVPPQFPLQFPPGQQPAPPFNMPPPGYPPATTNIPS
PWVPPGSQPPITNPTVPPLPSAHFLSKEEFYRQQRRLKEEYVPCNSLEKSKLEEFTNDFA
KELLEYRKIQKERRRSYSRSKSPYRSSYSGSSYSYSKSRSRSRSPRSYSRSISRSRSRSR
SRSRSRSRSRSYSPYSRRGRGRSRSYRSRSRTPPYHRSRTRSPSYRGREGAGISGGGGIY
RSRSRSPIYRTHSPGKKQPPAAQAEERKYTGRYREIPQYDAKAFYGRAVDQSDPYERERY
REWEREYREWYEKYFKSYEASQGGQIRGRGPGGRDAYSPERFAAHRPRDDSPYGRGRREE
YPAHGAPPRNRPLTYQERCAEKYGHLHVNNMPIGRGTNKEAPKPTKEREPSTSAAVDSKS
LKHRKHRKKRKGEDGDIFSHSDSMDESKKDERKGDSMLMNSSRDDATPVRDEPMDSTSVP
YKSSSDKERKEKTKSKSEKVKRKTESSTQKKEAPAKSTKPAREKEDTGRERVVSNEPAIK
RIKEDPSHKTETSKPHTSEKIMLPRKLQQSRPVKPHQEQKTVKDDSKARKEPAKDLPKVE
KPPAKDVKPKSEKPIKTEEKPTDKASEAKVEKRKRKEEKLPAKEPEFMPSKSPRVEVAEA
ASVSPKPKVENEKPMQKEKPAIPSLMDIKPEPARKIKLNREMGKRINERLSSEESVTGKV
KPDQKSKVKLRRQVHGTDRSGSTLVDYTSTSSTGGSPIKRHEEKPDLKKTVVKTLEEYTN
DSSTPAEDEIVMIQVPRSKWEKEDFDSEEDESKAAPASSADGDGDASAANSAASKSSEKE
PSKAPNAPKEVNPEAKPTKDLPSDKEKDGECEKERDKGKERDKSNTDRDASDRKKPGTSN
QDRERAQDRGSDHGSERSSSSQSSRDRQTDRTASTSRKPSSKENSASLADKKQEHRSSSK
DHTDFRQRDTKSREQPRKKDSPQTPPKMPSDTTKRASTASQESRLSEHSCSTDRKEPSRD
SKKTTSSEDSKGDKAVHREGARHSDNRVAKEKEQHKANQSTSVTESKSDPERSDARVKPP
STRSTRLPSDLTRETDEAAFVPDYSESESDASDVESKAERKEKGQESSASPAHSRSASPT
GSHAHSSSPSSPGSQDSKKKKKDKKDKKEKKKHKKHKKHKKHKKHAGNESESDAKGQKHK
HKKKKSKKSKDKDEKDNRTKDEQTEGSV
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgttcattataagttttcttctaaacttaattacgacacggtgactttcgat
gggctgcacatcaccgtgagcgagctgaagcgccagatcatgggcagggagaagctaaag
gctgcggactgcgacctccagatcaccaacgcccagactaaagaagaatacactgatgat
gtggctctaatccccaaaaactcctccgtcatcatccggcgaataccaatcggtggtgta
aaggcaacaagcaaaacatttctcattgaccgatccgaacagtcagttggaccttcaaaa
gccatcgatgattctccctccattactctggcgcagctctccaagacggcgaatctggcc
gaggcgaacgcctcagaggaagacaaaatcaaagccatgatgtcccagtccaatcatgat
tacgaccccattcattacacaaagaagatggtgggtcctcctcctccaaattacacctgc
tttcgctgtgggaaaagtggacactacatccgaaactgcccgaccaatgggcaggataaa
agttttgaggcgcctcagcggattaaaaagagcacagggattcctcgcagcttcatgatg
gaagtggacgatcccaacattaaaggtgccatgctgaccaacacgggcacttacgccatt
cccaccattgacgccgaagcgtatgcaatcgggaagaaggagaagcccccgtttgtccct
caggagcagtcgtcctcctctgatgatgacgatcccgttccagatgagttgctgtgtctg
atctgtaaagacttgatgaccgacgccgttgtgattccctgctgcggaaacagctactgt
gatgattgtattcgaacaagtttgttggagtcagaggagcacatctgtcccacttgcaac
cagtctgaagtttcacctgatgcgttaattgccaacaaattcctacgtcaggctgtgaac
aacttcaggaatgaaacgggctacaccaagagaattcgcaaagccgctgctcagagttct
actccagcccctcagcctcagccccgcgtccagcggcctgttcagcccctcaaacttcta
aactctcgccagcaggatccgttacgcgctcgcacgccgccccaaaacccacccgctgct
gtagttccacctgcggctgtacctcaaccacctgcggccgtgactccaccccgtgccgtt
acaccaccaactgctgtcactcagcagtcctcggccacaccccctgaggtcgatgcttct
cctgcgatcgagaccggtagtggcccccctgcaccggctctgtccccaccacagcagcca
cccaaacaggaggatgtcgtcctacctaaagagccagaaatacagctaaagcctttggtt
ttacctgacagtctgcttcctactccaattattccaaaggggccccacatttcattgatg
aaccagccacatctgcacccacttcctctccctttacccagaccagtctcaggaccactg
agacctggtgccccaagactgcctgcagttcgtcctgtgtgggatccgtccccggggcga
ggtcggccccttcccaatgatcgtcaccagagggcgcccgttcttccagtccagccgcct
cctgttgctccagcccttttcccaccctctcttttccctccccctcagcatactattccc
cacccttctagtgttgttccaccacaattcccgttgcagttccctccaggtcaacaacct
gccccccctttcaatatgcctcccccaggttatccccctgccacaacaaatatacctagt
ccatgggtaccgccaggttctcagcccccaatcacaaaccccactgtacccccattacca
tccgcacacttcttgtccaaagaggaattctacagacaacagcgtcgactgaaggaagag
tatgtaccttgtaactctttggagaagtccaaactcgaggagtttaccaatgactttgcc
aaagagttgttggagtacagaaagatccagaaggagagaagaaggtcctattccaggtca
aagtctccatatcgctcctcctacagtggctcatcctactcgtactcaaagtccagatct
cggtcccgatctcctcgttcctactcgcgctccatatcgcgatctcgctctcgatctcgc
tcccgctctcgttcacgatcccgttctcgatcctattctccatactccagaagaggcaga
ggtcgtagccgcagttatcgttctcgatcccgcacgcctccgtaccatcggtctcgaacg
cgctctccttcctacagagggcgagaaggagcaggaataagtggaggaggaggcatctat
cgatctcgctctaggtcgccgatctacaggacccacagtcctggcaagaaacagcctccg
gctgctcaggcagaggagcgcaaatatacagggcggtacagggaaattcctcagtatgac
gccaaagctttctacggtcgagcagtggatcagagcgacccttatgaacgggaacggtat
cgagagtgggagagagagtacagagagtggtacgagaagtatttcaagagttacgaggca
tcgcaaggcggtcagatcagaggccgtggtccaggtggacgagatgcatattctccagag
cgtttcgcagctcacaggcccagggacgattcgccgtatggcaggggtcgccgggaagaa
tatccagcacacggcgccccaccaagaaatcgtccgttgacgtatcaggaaaggtgcgcg
gaaaagtacggccatcttcatgtcaacaatatgccgattggaagaggaacgaacaaagaa
gcgccgaaacccaccaaagaacgagaaccatccacaagcgccgctgtggactcgaagagt
ctcaaacacaggaaacataggaaaaaaaggaaaggcgaggatggagatatattcagtcat
tcagactctatggacgaatcgaagaaagatgaacggaagggagactcgatgctgatgaac
tcgagtcgcgatgatgccacgcccgtccgggacgagcccatggacagcacctccgtgccc
tacaagagttcttcagacaaggagagaaaagagaaaaccaaaagcaagtcagagaaagtt
aaacgcaagactgagagtagcacacaaaagaaagaagctccagcaaaaagcaccaagcct
gccagagaaaaggaggatacaggacgggaaagggttgtttctaatgaaccggccatcaaa
aggatcaaagaagatccttctcataagactgaaacaagcaaaccgcatacttctgagaaa
atcatgcttcctcgcaaattacagcagtccagaccggtcaagcctcaccaagagcaaaaa
acagtcaaagatgactctaaagccaggaaagaaccagccaaagacttgcctaaagttgag
aaacctcctgctaaagatgtcaaacccaaatcggaaaagcccataaaaacggaggagaaa
cccaccgacaaagcgagcgaggcgaaggtggagaaacggaagcggaaagaggaaaagctg
cccgcgaaggagccagagttcatgccgagcaaatccccaagggtggaagtagctgaggcg
gccagcgtgtcgcccaagccgaaggtagagaacgagaagccgatgcagaaggagaagccc
gccatcccttctctaatggacattaaacctgaacctgctcgaaagatcaagctcaatcgt
gagatgggaaagaggattaacgagcgactttcttccgaggaatctgtcaccgggaaggtc
aaaccagaccagaagtcaaaagtcaagctacgacgccaggtgcacggtacagaccggtct
ggatccacgctggttgattacaccagcaccagctcaactggcggaagtcccatcaaaagg
catgaggagaaaccagacctgaagaagaccgtggtgaaaacgctggaggaatacaccaat
gacagctcgacacctgccgaggatgaaatagtcatgatccaggtgcctcgctccaaatgg
gagaaggaagactttgactcggaggaggatgaatccaaggccgcacctgcctcttctgca
gacggagacggcgacgcttctgctgccaactctgctgcttcaaaatccagcgagaaagag
cctagtaaagcgcctaatgcccctaaagaggttaatccagaggccaaacctaccaaggat
ctgccaagcgataaggagaaagacggtgagtgtgaaaaggaacgcgataaaggcaaagag
cgagacaaaagcaacaccgaccgcgacgcctcggacagaaagaaacccggtacctcaaat
caggaccgcgagcgagcgcaggacagaggaagcgaccatggaagcgagagaagctcctcg
tctcaatcgtccagagacagacaaaccgacaggacagcatcgacctccaggaagccatca
agtaaagaaaactctgccagtctcgccgacaagaagcaggaacaccgcagcagctcaaaa
gaccacaccgatttccggcagagggacacgaaatcgagagagcagcccaggaaaaaggac
tctccacaaacgcccccgaaaatgccctcagacaccactaaaagggcttctactgcttcc
caggagtccagactgtctgaacatagttgttccacagacaggaaggagccgtctcgggat
tccaaaaagacgacttcttcggaggactctaagggggacaaggcggtacacagagaagga
gccagacactctgataatcgcgtagcaaaggaaaaggagcagcacaaagcgaaccaaagt
acctcagtgaccgagtccaagagcgaccccgagagaagcgacgctcgcgtaaagcctcct
tcgactcgttccacccgtcttccctccgacttaacgcgggagacggacgaggccgccttc
gtcccagactacagcgagagcgagagcgacgcatcggatgtggaaagcaaggcggagcgg
aaggaaaagggacaggaaagcagcgcaagtccggcccacagcaggagcgccagccccacc
ggaagccacgcccacagcagcagcccgagctcgccaggcagtcaggacagcaagaaaaag
aagaaagacaagaaggacaagaaggaaaagaaaaagcacaaaaagcacaagaaacacaaa
aaacacaagaagcacgccggcaacgaatcggagtccgacgccaagggacaaaaacacaag
cataagaaaaagaaatcaaaaaagagtaaggacaaggacgagaaggacaaccggacaaag
gacgaacaaaccgaggggtcagtttga
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