Silurus meridionalis (southern catfish): 124397031
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Entry
124397031 CDS
T08004
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124397031 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124397031 (ddx5)
03009 Ribosome biogenesis [BR:
smeo03009
]
124397031 (ddx5)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124397031 (ddx5)
Spliceosome [BR:
smeo03041
]
Complex A
U1 snRNP components
U1 related factors
124397031 (ddx5)
Complex B
124397031 (ddx5)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
Pre-60S particles
Helicases
124397031 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124397031
NCBI-ProteinID:
XP_046722438
LinkDB
All DBs
Position
14:12748536..12754096
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AA seq
626 aa
AA seq
DB search
MPGYSDRDQNRDRRGYGNSYSSGPPRFGGSRNGPPSGKKFGSPGDRLRKKHWNLDELPKF
EKNFYQENPDVAHMSSQEVEQYRRSKEITVKGRDCPKPTIRFHEANFPSYVMDVINKQNW
TEPTPIQSQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILVATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQAQDLVSVLREANQAINPKLIQM
AEDRGGRSRGGRGGGYRDDRRDRYSGGRRDYNYSKDSHSSDRSYDSGPKKPFSSQTQNGA
TYSNGASNYIGTSSNGFNGAYNGQSSFNSNQAGSFSNQGFQNKPFQGASQGAAQNGVNHN
AQFPFTPQQQSMQPMMPFSMPPPNFP
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatattctgacagagaccaaaaccgcgaccgaaggggttatggcaacagttac
agcagcggccctccgcggtttggtgggagtcgaaatggtccaccttccgggaagaagttc
ggcagtcccggagacaggctgcgcaagaaacactggaacctggacgagctgcccaaattc
gagaagaacttctaccaagagaacccggatgtagcgcacatgtcctcgcaagaagtcgaa
cagtacaggaggagcaaagagatcacagtcaaagggagagactgccccaaaccgacgatt
agattccatgaagcaaacttcccatcctatgtcatggacgtgattaataaacagaactgg
actgaaccaactccaatccaatctcaggggtggccactggcactaagtggtaaagacatg
gttggcattgcccaaactggatctgggaaaactctttcgtatttgctccctgctattgtg
cacataaaccaccaaccattcctggagcgtggtgacggaccaatctgcctggtgttggct
cccactcgtgagttagcccaacaagtccagcaggttgcagcagaatacggcaaagcttct
cgtctcaagtccacctgcatctatggaggtgctcccaaaggaccacagattcgtgacctg
gagagaggggtcgagatctgcatcgctactccaggaaggcttattgacttcctggaagcc
ggaaagacaaatctgcgcaggtgcacgtatctggtgctggatgaggctgatagaatgttg
gatatgggctttgaacctcaaatccgcaaaattgttgaccagatcaggccggacagacag
actctgatgtggagcgctacctggcccaaagaggtgcgtcagctggctgaggacttcttg
aaagattacgtccagatcaatgtgggagctctgcagctcagcgccaaccacaacatccta
cagatagtcgatgtatgcaatgatggagagaaagaggacaagttgctgcgccttctagag
gagatcatgagcgagaaagagaacaagaccataatttttgtggaaactaagaggcggtgt
gatgacctcacaagaaggatgcgcagggatggatggcctgcaatgggtatacatggagac
aaaagccagcaggagagagactgggtgctcaatgaattcaagtttggcaaagcacccatt
ctcgttgctactgatgtggcatcgagaggtctggatgtcgaggatgtcaagtttgtaatt
aatttcgattatcccaacaactccgaggactacatccaccgcattggccgcacagcccgg
agccagaaaaccggaacagcgtacactttcttcacgcccaacaactttaagcaggcacaa
gaccttgtgtctgtcctccgtgaagccaaccaggccatcaatcccaaactcatccagatg
gcagaagacagaggaggtcgttcaaggggcgggagaggtggcgggtatagagatgatcgc
agggatcgttactccggaggcagacgggattataactacagcaaagacagtcacagcagc
gaccgcagttacgacagtggaccaaagaaacccttcagtagccagacacagaatggggca
acatacagtaatggggccagcaattacattggaaccagcagtaatggctttaatggggca
tacaatggacagtccagctttaatagcaatcaggctggtagcttcagtaatcagggtttt
cagaacaaaccgttccaaggtgcgagccagggagctgctcagaatggtgtaaatcacaat
gcacagtttcccttcacccctcagcagcagtccatgcaacccatgatgcccttttccatg
ccccctcctaacttcccctag
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