Silurus meridionalis (southern catfish): 124397242
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Entry
124397242 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124397242
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
124397242
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
124397242
NCBI-ProteinID:
XP_046722718
LinkDB
All DBs
Position
14:10677012..10692247
Genome browser
AA seq
2037 aa
AA seq
DB search
MPHWLPVMCPNVCLRWSGDPVWLFINREQRLLSSSSPSAGLAVLHKHIHTRPTLSRRCPQ
PVHTTDRRSTLAKAMQSFRERGGFQGNQRCYQQEPHELSRLENYRHHSQTGQGYEVHSLS
AAGMPTAGTSSKDCYGQQPYPSYGSSSDQSKKPYRGGKATSQHLQAGYSSHVNSGYSSQY
LSEGHLQQKWDESGQISQYEPDIAGHLEPGPSGSSQYLEQNILAISQSQCHLPSQPSAPV
YTSPHQQGHPSNHTQSPLMYPQSHIHFPQHSQPPSSTSSSSSSSSSSYMEKCNSIPHGYK
SGYGMPPNAQYSRQLGNHSTLKQNSYRPQNNYGYQQPPSRAGFEQPTSLQGMSGTSESLQ
KFPHYTQTQQNYCITDISVRSPEQYYQNCSPSSSHSPARSVGRSPSYSSTPSPLMPNPDT
FQYGQPINPSSTSANLQDPNMLMPPHTHPSPSVNHQPQSYSSSMKDRFSEKLFSNPSLWS
LNALTSQVENISNNVQQLLLSEALMANKKCNKRXTSQKGEEYRGHLKGMEDSCPESQHGP
LPSDSYGTPRSMPADLLEVGYSSSTEDQVERNYYFFGQGKGPTHTTHSTHSQLSLDTVST
CSVNSTDDMSVRSGDSDRSIQSAASEDNLSCDPRVQRLPFGEEQQGSLRSIRNERSPISV
TAPSPMKQESNSPIGIKQSESTQKENFEESAWTERIADEKEIGKIKLPTEQKCKGEVFEA
NEKRPEWLEDEKCPSIFHKLNKEVSNESYSYETEGTIYQKLKNKYEIEEENFAGKCCNTS
CKKIEDSEMKSEIFKSESQNNGEDPITESPAISKDVPESNLYLPRKEESSETPYLTSECE
SFEERLLTSERRNNVFKEQQSAPSYSVPAVRENGSLTSNEDVINNQAKLEESSTEAYINQ
DETESEPVCVVTNETAETLAQDVAHRSSERTSVTCDNAPQSHLVRSGFSALNEKTTPQNQ
ARDHIDHSDAKVLEPDSPQLPGKSIISSAPSWADTPPSPQKGDEDVEPGISCPSATKPEP
MALVAHPRLLGRKHARGRRRLIHSNAGIRSVESNGVPPSPQKPSMLSSNSANFSDQMEAV
QLDISSHTPKLLTEGLPSRMCTRSLGSQSTPKVFSQDRRKTGPKPVSKPGPKPGTKPSSK
PVLKPSPKQGLKPGQKPGPKPSTKPGAKPSLKSGPKQNLKPGPKPGAVPSVKPSSKPGAK
PAAIPALKQSPKPGLKPTEGVIPKGPGRPKGLNSRIKSVKYENNMDAITEHIEDTSCINE
TPEQQENTAVSLKTVVDNTLHTSIDSTIGSSLDTALDTSFVNSVAKDQKSMVLRSRKQKR
EKITEDKEKERDTSTEASAIKTTESHTQKVAAVQPCENQTSSLKSSNHEDISTDSLNEQI
VSVSIKRKSSLQAPDPVKKKKSLKVSQTKIQEPQPQELIAEAQGSKGRRKRGYKLEPSAC
STLTKDNIPLEEISDTPCVPPHCPTKTKYLPPRKGRGLKYEAMVQKITSPASKKQLLNIQ
PDVVLEELASKQSPELQLTEKRKTVNTATATQEEGESTVSIEETPEAACIQTHRKKHRKW
ATVESSDTPDVAVGTGSLIINTPRLAKQRAIKNNHEMHLKQRKKRRKGAELAKSVPTVET
HEHTDAFSSPPAPPLSPPTTFSLFPNAEEKTQGEQLSIEISSTANKPKRGRRPSLKKKQE
DFGQQLGNEEGQKIKKKPGPKKKIQQNNNSTIKVTVKRLKPKIKCKKKHVPTVKGILTDF
LKTQESEGKHSFKPYVHIDSFKKRASLCTIVNKPEEKHLLVQTKKKNLGKNKTISNSSIM
LQGPLVNRSLTDRCLICCLCGKPANYRELGDLCGPYYPENTIPRKTLSLTYHEDFRQNRD
MDQAKVEMCSTEQIKDMKREGVEGSFQEGTSEGDCRQVMRERRAQLRSHLGLRTRFKRLQ
LLQGRAGGGVPPAGEEGFYSVLQRLQLEAEVNEHWAHESCTVWTSGVILIADKLYGLKEA
AQESTLTKCSKCQSEGASIGCSWKNCIHKYHYVCAKETGCIFDEDTFLIKCPKHQAM
NT seq
6114 nt
NT seq
+upstream
nt +downstream
nt
atgccgcactggttgcctgtgatgtgccctaatgtctgtctgcgatggagcggggatcca
gtatggcttttcatcaacagagaacaaaggctcctgtcatcctcatctccctctgctggc
ttggctgtgctccacaagcacattcacactcgcccaaccctgtccagacgctgtccccag
ccagtccacacaacagacagaaggagcaccctagctaaagccatgcagtccttcagagag
aggggtggtttccagggcaaccagcgctgctaccagcaggaaccccatgaattatctcgc
cttgagaattacagacatcacagccagactggacaaggctatgaggtgcactctctttct
gctgcagggatgccaacagcaggaacaagctccaaggactgttatgggcagcagccctac
cccagctatggcagcagttcagatcagagcaagaaaccatacagaggaggaaaagctaca
agccagcacctgcaggctgggtacagtagccacgtgaattctggatattcatcccagtat
ttgagtgagggacacttacagcagaagtgggatgagtctggtcagatatctcagtacgaa
cctgacattgcgggacatcttgagcctgggcccagtggctcatcacagtatcttgagcag
aacattttagccatttcacaaagccaatgccacctcccctctcaaccctctgcccctgta
tatacaagcccccatcagcaaggtcatccttccaatcatactcaatctcctttaatgtac
ccacagagccacattcatttccctcaacactcccaaccaccctcctccacttcatcatca
tcatcatcatcatcatcatcatacatggaaaaatgcaattcgattcctcatggctacaaa
agtgggtatggaatgccacctaatgcccagtattcaagacaactgggtaaccacagtaca
ctgaagcagaatagctataggccacaaaataattatggctaccaacagcctccttcaagg
gctggatttgaacaaccgacttccttgcagggaatgtcaggtacgtcagagagtcttcaa
aaattcccacattatacacagacccaacaaaactactgtataacagatatttctgtgagg
tcacctgaacagtattaccagaactgcagtccaagctccagccactcacctgcaaggtct
gtgggcaggtcaccttcatatagctccacaccttcacccttaatgcccaatcctgacaca
ttccagtatggccagccaatcaacccttcctccacttctgcaaatctgcaagatccaaac
atgttaatgcctccccacacccacccatctccaagtgttaatcaccaacctcagagctac
tccagttctatgaaggaccgtttttctgagaagcttttttctaacccgagcttgtggagc
cttaatgctctgacatctcaggtagagaacatttccaacaacgtccaacaattattgctc
tcagaagctcttatggccaacaaaaaatgtaacaagcgannaaccagccaaaaaggagag
gaatataggggccacttaaagggaatggaggactcgtgtcctgagagccaacatggccct
cttcccagtgactcttatggaaccccaagatctatgcctgccgatcttctagaagtagga
tattcaagcagcactgaagatcaggtggaacgtaactactacttctttggtcagggaaaa
ggtccaacacatacgacacattcgacacattctcaattgagtctggacaccgtttctacc
tgctccgtaaactcaacagatgacatgtctgttaggtctggggactcagatcggagtata
cagagtgcagcctctgaagataatctaagctgtgacccaagggtacagagattaccattt
ggagaggagcagcaaggttccctcagaagcatcagaaacgaaagatcccctattagtgta
acagccccaagccccatgaagcaggagagtaattctccaataggcataaagcagtctgag
agtactcagaaggagaattttgaggaatctgcctggactgagaggatagctgatgaaaaa
gaaattggtaaaataaagcttcccacagagcaaaagtgcaaaggagaagtttttgaggca
aatgagaaacgaccagaatggttagaggatgagaagtgcccctcaatttttcataaatta
aataaagaagtgtcaaatgaaagctattcttatgaaacagaaggtaccatatatcagaag
ctgaaaaacaaatatgagatagaggaagaaaattttgctgggaagtgttgtaacaccagc
tgcaaaaaaattgaagattcagaaatgaaatctgaaatattcaaatcagaatcacaaaat
aatggtgaggaccctataacggaatcaccagctatttcaaaagatgtgcctgagtctaat
ctatatttgcctaggaaagaggaaagctctgagacaccttatctcacctctgagtgtgaa
tctttcgaggaaaggctgttaacctctgagagacggaataatgttttcaaggagcaacag
tctgccccatcctattcagttcctgcagtaagagaaaatggaagtttgacatcaaatgaa
gacgtgattaataaccaagcaaaactagaagagtcttctacagaagcctatattaatcaa
gatgaaacagaaagtgaaccagtgtgtgtggtcaccaatgaaacagcggagacccttgcc
caagacgtagctcacagaagcagtgaaaggacatcagtcacatgtgacaatgcacctcag
tctcaccttgtcagaagtggcttctcggctctcaatgagaaaacaacacctcagaatcag
gcgagggaccacattgatcacagtgatgcaaaggtgctggagcctgactctcctcagttg
ccaggcaagtcaataatatcctctgcaccatcttgggctgatactccaccctctccacag
aaaggtgatgaagatgtggaaccaggtataagctgtcctagtgcaactaaaccagagccc
atggccctagttgcacatccaagactattaggcagaaagcatgcacggggtaggagaaga
ttaattcattcaaatgcagggattaggagtgtggagagtaatggggtgccgccatctcct
caaaagcccagtatgctctcaagtaacagtgccaacttttctgatcagatggaggctgtt
cagctggatattagcagtcacacaccaaaactcctcacagaaggtttaccatcccgtatg
tgtactcgctctttagggtcacaaagtaccccaaaggttttttctcaagatagaaggaaa
acaggtccaaagcccgtttcaaaacctggtccaaaacctggcacaaagcctagttctaag
cctgttttaaaaccaagtccaaaacaaggactaaaacctggacaaaaaccaggcccaaag
ccaagtaccaaacctggtgcaaagccttctttaaagtctggtccaaagcaaaatttaaaa
cctgggccaaaacctggggctgtgccaagtgttaaacctagttcaaagcctggagcaaag
cctgctgctatacccgctttaaagcagagtccaaaacctggtttaaagcctacagaagga
gtgattcctaagggccccggtcggccaaaaggcctcaactccagaatcaaatcagtgaaa
tatgaaaataatatggatgccatcacagagcatattgaagacacaagctgcataaatgaa
acccctgaacaacaggaaaatactgcagtcagtctgaaaactgttgttgataatactttg
cacacttcaatagacagcacaataggttcctctttggacactgctttggatacttccttt
gtaaattctgtagcaaaagatcaaaaatccatggtattaagatctcggaagcaaaaacgg
gaaaagataacagaagacaaggagaaagagagagatacatcaactgaggcatcagcaata
aaaaccactgagtcacatacacagaaagtagctgctgttcagccttgtgagaaccaaaca
tcaagcttaaaatcatccaaccatgaggatatcagtacagattcacttaacgaacagatt
gtgtcagtatcaatcaagagaaaatctagtttacaagccccagacccagtcaaaaaaaag
aaaagtttgaaagttagtcaaacaaaaatacaagaacctcagccacaagagttaatagca
gaagcccaaggttctaagggaaggagaaagcgaggctataaattagaaccatctgcttgc
agcactctgaccaaagataacattcccttggaagaaatcagtgacacaccttgtgtgcct
cctcactgtcctacaaaaactaaatatctgcctcctaggaaaggcagaggactaaaatat
gaagcaatggttcagaaaatcacttccccagcatccaaaaaacagcttttaaatatccaa
ccagatgttgtgctagaggaattagcatccaagcaatcacccgaactacagttaacagaa
aaaagaaagactgtaaacactgcaacggcaacacaagaggagggtgagagtacagtaagc
attgaggagactccagaagcagcatgtatacaaactcatcgaaagaagcacagaaagtgg
gccacagtggagagcagtgacacaccagatgtagcagtagggactggtagcctcattatc
aacacaccaaggttagccaaacagagagccattaaaaataaccatgagatgcatctgaag
caacggaagaaaagaagaaaaggcgccgagcttgcaaagagtgtgccaactgtggaaaca
catgagcatactgatgcattcagctctcctccagcacctccactgtcaccaccaacaact
ttctctctctttccaaacgcagaagaaaagactcagggtgaacagctttcaatagagata
agctcaacagcaaataaaccgaaaagaggcaggcggccatcacttaaaaagaaacaggaa
gacttcggtcagcaactaggaaatgaagaaggtcaaaagatcaagaaaaagcctggtcct
aaaaaaaagatccaacagaataacaacagtaccattaaggtcactgtgaaaagacttaag
cccaaaataaaatgcaaaaagaaacatgttcctactgtaaaagggatattgacagacttt
ttaaaaacacaggaaagtgaaggcaagcattcttttaaaccatatgtgcacattgacagc
ttcaaaaagcgtgcttccctttgtacaatcgtaaacaaacctgaggaaaagcatctgctc
gtccagacaaaaaaaaagaatttgggaaaaaacaaaacaatatcaaactcctcaataatg
ctccagggccccttagttaacagaagcctaactgacaggtgtctcatatgctgcctgtgt
ggaaaaccagctaattacagagagcttggggatttgtgtggcccatactaccctgaaaac
accataccacggaaaacactgtctttaacataccatgaagacttcaggcaaaacagagac
atggaccaagccaaggtagaaatgtgcagtactgagcaaatcaaagatatgaagagagag
ggagtagaaggatcatttcaggaggggacaagtgaaggagattgcaggcaggtgatgaga
gaaagaagggcacaacttagaagtcatcttggcttacggacgaggttcaaaagactgcag
ctgttgcaaggcagagctggtggaggagttccccctgctggtgaggagggcttttactct
gttctacaaaggttacagctggaggctgaggttaatgagcactgggcacatgagtcctgc
accgtctggaccagtggcgtgatcctaatcgcagacaaactttatggactgaaggaagct
gcacaggaatctacactcacaaaatgctcaaagtgccagagtgaaggagcctccatcggc
tgcagctggaagaactgcattcataaataccactatgtctgcgccaaagagacaggctgc
atattcgatgaagacactttcttgataaaatgtccaaaacaccaggcaatgtaa
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