Silurus meridionalis (southern catfish): 124397243
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Entry
124397243 CDS
T08004
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04020
Calcium signaling pathway
smeo04080
Neuroactive ligand-receptor interaction
smeo04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124397243 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124397243 (grin2ca)
04082 Neuroactive ligand signaling
124397243 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124397243 (grin2ca)
Ion channels [BR:
smeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
124397243 (grin2ca)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
124397243
NCBI-ProteinID:
XP_046722719
LinkDB
All DBs
Position
14:11717730..11769904
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AA seq
1418 aa
AA seq
DB search
MGVRLGLLSDALWPPLLLLLLLCAWHCCWGRPFTMPDPTVNVAVVFSGSAYQVEIKGRLS
RENFLDLPLEVNPITVLVNDSNPRALLTRICDTLAANRVHGVVFEDNIGSEAVAQILDFI
STQTSVPIVGISGGSAVVLPYKDDGSNFLQLGASIEQQINGMFKVMEEYNWDSFAVVTSQ
YPGYEAFVDYIRSFTDTSYFLWELQNVLTFDMSTDNMNDLRARRLLQQIDAQVLLVYCSF
EEAQYLFSIAREVGLVGPGYIWIIPSLAVGNPNLPPPDSFPVGLISIITDRWKMSLRNRV
RDGVAIVVKAMESFRKHRGFIPDGHADCQSSPLQPDGNDTLFRHMLNVSWDHTDFSFNSE
GYLVNPSMIIITLDRDRQWDKVGNYESGIMQMRYPVWPRYGTYLEPVSDNRHLTVATLEE
RPFVIVEAVDPITGTCLSNTVPCRRQSNKTEVIIGDTEPYTKLCCKGFCIDILKKLSRNI
KFSYDLYLVTNGKHGKLVRGVWNGMIGEVVYKRADMAIGSLTINEERSEIIDFSVPFVET
GISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSA
KDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAA
FMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYNQK
GVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKESRW
KRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLS
LLVFAWEHLLYWKLRHSVHRSERLDFLLAISRGIYSCFSGVEDADHDGSIQSPDVTSSYT
QANMLKMLKTAKDIVSSARVENSLDNATKTIENWSRRAPEASKPSLPTRLISTDASHGRL
PYISSVTCNHTPYTQRALTSPFPLHYGDSATLVEKPRVVTRPTALRYTLPARTSHHHIYE
RTLPISSLSSPHIAMRDPPPPTAPKPHHSARLFMDSQGCHQMTSSFLPYHEFHVPDIYVE
HQAPSESRKLYTEGLGRKKRSHSYVAQSPEPRRRNDYDEPTSCLAELRANQLLDNHAHTS
PCMGSHYQRPSGSCNSCMKSYLDPDMDDVPLLGKEKLNRRASFLRATWGTDRLRHLDEKP
STSASSSSRINMPDLFPRVVVANPKPSKMYANASNNFCYNMPAEPAYLDPAHMGSYPYKP
QKLKYSHSTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYMGPLAQGPAH
FYDHSKDMCHMYPCINHCTNDGALVTRIGGRPVMYENTAFGGYAGVGCSREEPPLQPLHS
LPVSSKNRDRRHLLVARRINSPYVPKPWGRVSSLESEV
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggcctcctgagcgatgctctctggccgccactgctgttgttgctg
ttgctctgtgcttggcactgctgctggggccggccattcacgatgcctgatcctactgta
aatgtagctgtagtgttcagtggctctgcctaccaggtggagattaaagggcgtctgagc
cgggagaacttcctggacctacctctggaagtaaaccccattacagtgctggtgaatgac
agcaatccacgggcactgttgactcgcatctgtgacacactagctgctaaccgtgtgcat
ggtgtggtctttgaggacaacattggctctgaggctgtggcacagatcctggactttatc
tcaacgcagacatccgtacccattgtaggcatcagcggtgggtctgctgtggtcttacca
tacaaggatgacggctccaacttcttgcaactgggtgcttctattgagcaacagatcaat
ggcatgttcaaagtgatggaggagtacaactgggacagttttgcagtggtgactagccag
taccctggttatgaggcctttgtggactatatccgctccttcacagatacctcctacttt
ctgtgggagctacagaatgtactgacttttgacatgtcaactgataacatgaatgacctg
cgtgctcggcgtttgctacagcagatcgatgctcaggtgctgctcgtctactgctcattt
gaagaggctcagtatctctttagcatagccagagaggtgggactggttggacctggttat
atatggatcattcccagcttggcagtgggcaaccccaaccttccaccacctgacagcttc
cctgttggtttaataagcatcatcacagaccggtggaaaatgagtcttagaaatagggtg
agggatggtgtggccatcgtagtgaaggcgatggagagcttccgcaaacacagaggcttt
attcctgatggacatgctgactgccagtcaagtccattacagccagacggcaatgataca
ctcttcaggcacatgttgaatgtgtcatgggatcacacagacttctcattcaacagtgaa
ggatacctcgtcaacccttccatgattataatcacgctggaccgggacagacaatgggac
aaggttggaaattacgagtctggtattatgcagatgcgctatcctgtctggcctcggtat
ggaacgtacttggagccagtttctgataaccgccatcttactgtggctactcttgaagaa
aggccatttgtgatagtagaggctgtggaccccatcaccggcacctgcctcagcaacact
gtgccctgcagacggcaatcaaacaagactgaggtgatcattggagacactgagccctat
accaaactgtgctgtaaaggcttttgcatcgacattctaaagaaactttcccgtaacatc
aagttctcctatgacctttatctggttaccaatggcaaacatggcaaactcgtccgaggc
gtttggaatggcatgattggagaggtggtctataagagggcagacatggccattgggtct
ctcactataaatgaggagcgctctgagatcatcgacttttctgtgccgttcgtggagacg
gggatcagcgtgatggtggccaggagcaacggaactgtgtctccatcagcctttttggag
ccctacagccctgctgtgtgggtgatgatgtttgtgatgtgcctaacagtggtggccgtg
actgtgtttgtgtttgagtacttcagccctgtaggatacaaccgtagcttggtcagtgcg
aaagatcctggtgggccaacctttaccattgggaagtcagtgtggctgctttgggggatt
gtcttcaacaattcagtgccaattgagaacccaaaaggcacaacgagtaagatcatggtg
cttgtttgggccttctttgctgtcatcttcctggccagttacacagccaacctggcagca
ttcatgatccaggagcagtacattgacactgtttctggactaagtgacaaaaagttccag
aagccacaggagcagtatccaccatttcgcttcggtacagtacctaatggcagcacagag
aggaatataaggagcaactatcctgagatgcactcccacatggtcaagtacaaccagaaa
ggtgttgaagatgccctgaacagcctcaaaactggcaaacttgacgcctttatttatgat
gctgctgtgctgaactacatggctggaaaagatgagggctgcaaactcgtgaccattggc
agtggaaaggtctttgcaacgacaggctacggcattgccttacagaaggaatcccgctgg
aaacggcccattgaccttgccctcctccagtttcttgctgatggtgatactcagaagctt
cagacagtgtggctgactggaatctgtcgcaatgagaagaaagaagtgatgagctccaag
ttggatattgacaacatggctggagtgttctatatgttgctggtggccatgggcctcagt
ctgttggtgtttgcttgggagcacctgctctactggaaactacgccactctgtgcacagg
tctgaacgccttgacttcttactggcaatcagtaggggtatctacagctgcttcagtggt
gtcgaggatgcagaccacgatggaagtatacagagcccagatgttactagcagttacact
caggccaacatgctaaagatgcttaagacagccaaagatattgtatcttctgccagagtg
gagaactccttggacaatgccaccaagacgattgaaaattggagccgccgagctccagaa
gcttcaaagcctagtcttccaacccgtctgattagcacagatgccagtcatggccgtttg
ccctatatctccagtgtcacctgcaatcatacaccttacacccagagggcactaacttcc
ccttttcctctgcattatggagacagtgccacattggtagagaagcctcgggtagtgaca
aggcctaccgcattacgttacactctccccgcacggaccagccaccatcatatatatgaa
cggacactacctatttctagtctgagcagtccccatattgctatgagggatcccccacct
cccacagccccaaagccacatcacagtgccaggctattcatggacagccagggctgccat
caaatgacctcttcctttctcccttaccatgagttccatgtccctgacatctatgtggaa
caccaagcaccttctgagagccggaaactgtacactgaaggactgggccgcaagaagagg
tcccacagctatgtggcacaatcaccagaacctcggcgcaggaatgattatgatgaacca
acctcttgcttggctgagcttagagctaatcagctactggataaccatgcccatacttct
ccctgcatgggaagccactaccaaaggcccagtggcagctgtaactcctgtatgaaatca
tacctggatccagatatggatgatgtccctctgcttggaaaggagaaactgaaccgacgc
gcctcgttcctcagggccacatggggtactgacaggttgcggcatctagatgagaagcct
tcaacctctgcatcttcttccagtcgcatcaacatgccggacctctttcctcgtgtagtg
gtagctaatcccaagccttcaaagatgtatgccaatgctagtaacaacttttgctacaat
atgccagctgagccagcttatcttgacccagctcacatgggatcctacccctacaagcca
cagaaactcaaatactctcattctacccgccttccctcataccgtgaggcaattctgcag
aatgcagcagctctgcggcggtcttcttctacagttgtgcacagacattattctacctac
ctaaactcatacactgacttgccagtatatatgggtccactagcacaggggcctgcacat
ttttacgatcattccaaagacatgtgtcacatgtacccctgcatcaaccactgcacgaat
gatggtgccctggttacccggataggtggaaggcctgtgatgtatgaaaacactgctttt
ggaggctatgcgggtgttggatgctcacgtgaagaaccacctctgcagccactgcacagt
ttaccagtctcatctaagaacagggaccgcagacaccttttagtggcacgaaggattaat
agtccctacgtgccaaagccctggggcagagtgtctagtctggagtctgaagtttaa
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