Silurus meridionalis (southern catfish): 124397296
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Entry
124397296 CDS
T08004
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
smeo03040
Spliceosome
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124397296 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
124397296 (alyref)
03015 mRNA surveillance pathway
124397296 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124397296 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124397296 (alyref)
03041 Spliceosome [BR:
smeo03041
]
124397296 (alyref)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124397296 (alyref)
TREX complex
124397296 (alyref)
Spliceosome [BR:
smeo03041
]
Complex C
Other components
EJC/TREX
124397296 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124397296 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
124397296
NCBI-ProteinID:
XP_046722789
LinkDB
All DBs
Position
14:complement(13799295..13802637)
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AA seq
278 aa
AA seq
DB search
MVDKMDMSLDDIIKQSKQRGGAGGRGGRGGRGRGGAGGGRGVGSAGRLGGSPGGSYGGRG
GGLGLMRNRQNLGRGRSSRPTPYSRPKQLPDKWQHDLFDNGYSTNAGGGGGGGGGGAGVE
TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM
KQYNGVPLDGRPMNIQLVTSQIDAQRRGPVQGLIRGGGGGGMNRNKMGSFGGMQRGRGGR
GGGLRGRGRGGRGNNKQQLSAEELDAQLDAYNARMDTS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggtagacaagatggatatgtcgttggacgacatcatcaagcagagtaagcagcgggga
ggcgcgggcggccgcggtgggagaggtggccggggccgaggaggcgctggcggcggacgc
ggcgtaggaagcgccggtcggctgggaggcagccccggtggaagctatggaggtcgcggc
ggaggcttgggcctaatgaggaatcgacagaacctgggccgtggcagaagcagcagaccc
acaccgtacagcaggcccaagcagctccccgacaagtggcagcatgacctgtttgacaac
ggctatagcaccaatgctggaggtggcggcgggggcggtggtggaggagcaggagttgaa
accggcggaaagctgcttgtgtccaatctcgactttggtgtctccgatgcagacattcag
gagcttttcgcagaatttggcaccctgaagaaggctgcggtccattatgaccggtccggc
cggagtctcggcactgcggatgtccactttgagaggaaagctgatgctttgaaagcaatg
aagcaatacaacggtgttcctcttgatggtcgtccaatgaacattcagctagttacatca
cagatcgatgcacagagacgaggtccagtgcagggcctgattcgtggtggtggtggtgga
ggcatgaacagaaacaagatggggagctttggcggcatgcagagaggacgaggaggtcgc
ggaggtggcctcagaggccgtggaagagggggcagaggcaataacaaacagcagctctca
gcagaagagttggatgcccagttagatgcctacaatgccaggatggacaccagctaa
DBGET
integrated database retrieval system
