Silurus meridionalis (southern catfish): 124397338
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Entry
124397338 CDS
T08004
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
smeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124397338 (pold1)
03410 Base excision repair
124397338 (pold1)
03420 Nucleotide excision repair
124397338 (pold1)
03430 Mismatch repair
124397338 (pold1)
03440 Homologous recombination
124397338 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124397338 (pold1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124397338 (pold1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124397338 (pold1)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
124397338 (pold1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
124397338 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
124397338 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_exo2
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
124397338
NCBI-ProteinID:
XP_046722869
LinkDB
All DBs
Position
14:6665948..6678562
Genome browser
AA seq
1105 aa
AA seq
DB search
MEFKRRNGGPSGGGGSQAKKGKMGSEWEDSPSLFEEELALFDEMEMEMESREGQAGHDVI
PVGDLFSADLNPRWRRPAPAPLQPDEDTLIFQQVDLDYYLGSAVAGMPGQSQGKVPVVRM
FGVTDAGNSVCCHIHGFAPYFYVPAPAGFTNDHLVEFQKELNSAVLKDMRSNKDNISVTV
LAVDVTRKESMYGYHGNRSLDFLRITMAMPRLIAPAKRLLEQGIKFAHFTSQSYAAYEAN
IDFEIRFMVDAGVVGCCWIELPKGKYKLREEKSVGETDSREPGKVSLCQYEVDIGWTDLI
SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEAEVDPVIQIASMVQRQGEKEPFIRTVFT
LQSCSSIVGSQILCFTQEKQLLQSWAEFVRTVDPDIITGYNIQNFDLPYLLNRAAALKVN
YFPYLGRMRGIRSVLKDSSFQSKQMGRRENKTVNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PITTLDFSSLYPSIMMAHNLCYTTLLQKGQAEKLGLSSDDFIKTPTGDYFVKSSVRKGLL
PEILENLLSARKRAKSDLKKETDPFRKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTVANGCNADAKVIYGDTDSVMVKLGVDTVQKAMDVGK
EAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSSSEHHDKMDCKGIETVRRDN
CPLVANLINTCLQKTLIERDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTEY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCK
AVLKTDTAVCDFCKKKESELYQKEIAHLSVLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLGDQEKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaagcgacggaatggaggaccttcaggtggcggaggctctcaggccaaaaaa
ggcaaaatgggctctgagtgggaggacagtccatcgctttttgaagaagagcttgccctg
ttcgatgagatggagatggagatggaatcccgggaaggccaggcggggcacgatgtcatc
ccagtgggtgatttgttttcagcggatctgaacccacgctggcggcgtccggccccggcg
cctcttcagcctgatgaagacacgctaatcttccagcaggtggacctggactattatctg
ggttctgctgtggccggaatgccaggacagtcccaggggaaggttcccgtggtccgaatg
ttcggagtgaccgacgctggaaacagcgtctgctgccatatacatggttttgctccttac
ttctacgttccggctccagctggcttcactaacgatcacctggtcgagttccagaaggag
ctgaactctgctgtgttgaaggacatgcgctccaacaaggacaacatctccgtcacggtg
ttagcggtggacgttacacgcaaagagagtatgtacggttaccatggcaaccgttcactg
gatttcctgcgtatcaccatggcgatgccacgcctgatcgccccggccaaacgtctcctg
gagcagggaattaagtttgctcacttcaccagtcaaagctacgctgcgtacgaggccaac
atcgactttgagatcagattcatggtggacgctggtgtagtggggtgctgctggattgag
ttgcctaaagggaagtacaaactaagagaggagaagagcgtaggagagaccgactctcga
gaacctggcaaggtgtctctgtgtcagtatgaggtggatatcggatggacagacctgatc
agtcacccagcggaaggggaatggcagagaatcgctcctctcagggtcctcagctttgac
attgagtgtgcagggagaaaaggtgtgtttccggaagctgaggtggacccggtgattcag
atcgcgtccatggtgcagcgtcagggagagaaggagccttttatccgcactgtttttacc
ttacagagctgctctagtatagtgggctcacagatcctctgcttcacccaagagaagcag
ctactacagagttgggccgagtttgtgaggacggtggatcctgacatcatcaccggctat
aacattcagaactttgacctgccatacctgctcaacagagccgctgctttaaaggtgaat
tatttcccctatctgggccgtatgaggggcatcaggtcagtgcttaaagactccagtttc
cagagcaagcaaatgggccgcagagaaaacaaaaccgtcaacatggagggcagagtgcag
tttgaccttcttcaggtcctgttgagagactataagctgcgctcgtacacactcaacgcc
gtcagtttccacttccttcaggagcagaaagaggacgtccagcactccattattacagat
ctgcagaatggaaatgagcagacgaggaggcgtctagccgtctactgtctgaaagacgcc
tacttgcccctgcgcctgctgcagaagctgatgtgtgtgattaattacatggagatggcc
agagtcacgggcgtgcctctgacctacctcctttctcgaggccagcagattaaagtcgtg
tcacaattactacgacaggccatgaagcaggacttggtgatgccggtagtgaagactgaa
ggtggggaggattatacaggagctacagtcattgagccagaaaaggggtactacagtgta
ccgattaccactctggatttttcctcgctgtacccatcaattatgatggctcataacctg
tgttacacaacacttctgcagaagggccaagcagagaaactgggtctctcttcagacgac
ttcattaagacacctacaggagattattttgtcaaaagctctgtgaggaagggcctcctc
cccgagatcctggagaacctcctgagtgctcgtaagagggcaaagtccgatctgaagaaa
gagaccgacccgttcaggaagcaggtgttggacggcaggcaactggctttaaagatcagc
gcaaactctgtgtacggtttcactggtgcacaggtgggcaaactgccctgtctggagatc
tcacagagtgttacaggcttcggcaggcagatgatcgaacaaactaagcagcttgtggaa
tccaaatacactgttgctaacggatgtaacgctgatgccaaggtgatctatggagacaca
gactctgttatggtgaaactgggagtggacaccgtgcagaaggcgatggacgtagggaag
gaggcggctgagtgggtgtcctcacactttgtcccaccaatcaagctggagtttgagaag
gtgtattatccatatttacttatcaataagaagaggtacgcaggcttgtatttctcctcc
agctccgagcatcatgacaaaatggactgtaaaggaatagagaccgtgaggcgagacaac
tgccccctagtggccaaccttatcaacacgtgccttcaaaaaactctcatcgagagagat
cctgatggagctgtagcccatgctaaagaggtgatctcagacctgctgtgtaaccgcatc
gacatcagtcagctggttatcaccaaagagttgacgcgcacagcccaggagtacgcaggc
aaacaagctcatgtggaactcgcagagaggatgagaaagcgagatgcaggcagcgctccg
aatctcggcgatcgagtcccttacgtcataatcaaggcagccaaaggagtagcagcgtac
atgaagtccgaggaccctatttatgtgctggagaacaacatacctattgacaccgaatac
tacctggagcagcagctgtctaaacctttactgcgcatttttgagcctatactgggagaa
accaaggctgagagtgtattactcaagggagatcacacacgctgtaagactgttctgacc
tcgagagtgggtggcctcatggcctttgcgcagaaacgtagcacatgcatcggctgcaaa
gcggttctcaaaacagacactgctgtgtgtgacttctgtaagaagaaggagtctgagctt
tatcagaaagagattgctcacctgtctgtcctggaggagagattctctcgcctgtggact
cagtgtcagcgctgccaagggtctctgcatgaagatgtgctgtgtaccagtcgagattgt
cccatcttctacatgagaaaaaaggttcagaaagaccttggggatcaggagaagcttgtc
tcacgtttcggttggtga
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