Silurus meridionalis (southern catfish): 124397629
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Entry
124397629 CDS
T08004
Symbol
myo5b
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
124397629 (myo5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124397629 (myo5b)
04131 Membrane trafficking [BR:
smeo04131
]
124397629 (myo5b)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124397629 (myo5b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124397629 (myo5b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
124397629 (myo5b)
mRNA cycle factors
P-body specific factors
124397629 (myo5b)
Membrane trafficking [BR:
smeo04131
]
Others
Actin-binding proteins
Myosins
124397629 (myo5b)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
124397629 (myo5b)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
124397629 (myo5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
MYO6_lever
AAA_16
AAA_22
Ac76
Zeta_toxin
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
124397629
NCBI-ProteinID:
XP_046723177
LinkDB
All DBs
Position
15:complement(14781704..14850982)
Genome browser
AA seq
1814 aa
AA seq
DB search
MTTDQELYVKYTRVWIPDPEEVWKPAEIVKDYKEGESVLHLKLEDESTLAYPIGPKDNPL
PFLRNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYEQLAIY
GEEVINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRY
FATVGGAANDTNVEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDRRYHIIGANM
RTYLLEKSRVVFQAEDERNYHIFYQLCASASRPEFKDLALTSAEEFTYTSLGQNIFIPGV
NDDVDLQKTRDALTMLGVKENHQMNIFQIIASILHLGNVEIVSERDGESCHINRNDPHLL
HFCELLGIEKDQMENWLCRRKLATATETYVKNMSSVQASNARDALAKHIYAHLFDWIVEH
INKALHTSTKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYM
KEQIPWTLIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWVQKLYGRHTASEHFE
KPRMSNTSFIVVHFADKVEYQCEGFLEKNRDTVYEEQINILKASKFQLVADLFQEEKSAP
ASAGKTSKINVRPAKPMPKSHNREHRKSVGTQFRSSLHLLMETLNATTPHYVRCIKPNDL
KEAFVFDSKRAVQQLRACGVLETIRISAAGYPSRWTYSDFFSRYRVLMKKKDVTADKKQV
CRSLLEMLIKDPDKFQFGKTKIFFRAGQVAYLEKLRADKFRFACIKMQKTVRGWLQRRRY
QKIRKSAILLQRYGRGLLARRYAEQLRLTRAALICQKQYRMARVRRAYLTIRKATITIQA
FTRGMFTRRLYQEYMMHHKASIIQRCVRRWLHRRKFCRARDAAVVLQCAYRRVLARRRFN
QLKIAARSAEHFKNLNVGMENKIVQLRRKMDDQKHEYIVQNEKLSEANTVLVTEVSKLQK
QLEVAQNRKGESTQLSSLQDELEKLREALQDAHAQKKKLEEEHSTEKQGLEQRVQELERE
NSLLKEEKEAMNQKILRQSQSSGGKDGSLSQKEASIQAELDDERLRYQNLLKEFNRLEQR
YENLQEEATYAKFVPGHRRSPSIQSSLGSDSTFPSISMSEVGDTEDTIQQVEDMGLEKAA
NDISVFMKLQKRVRELEQERKKLQTNLEKMEELSKQKAIDSKISTSEADTNADLAYNSLK
RQELESENKKLKNDLNELRKSLVERASENCSSNELQDSYNVLLNQLKAANEELDVRKEEV
LLLKTQIVSTTKPSENTNHINSTDIEWDSNKKPVEKEEVLQAYQGLSESKRLLETQLQSQ
NRKHQDELEALHTQIEVMKEDLEKKQEMLNHFSSLSPDALVEFSVQQEITRLTNENLDLK
EVMEKLEKNERKLKKQLKIYIKKVQELEACQAAVNRPKLVRQVTVQRKEKDFEGMLEYYK
EDEALLIRMLITDMKPQIVSATVPCLPAYILFMCIRHADYINNDQKVHSLLTSTINAIKK
LLKKNSEDFEMTSFWLANTSRLLHCLKQYSGEEAFMTQNTSKQNEHCLKNFDLAEYRQVL
SDLGIQIYQQLIRIAETTLQPMIVSSMLESGTLTGVKPLGYRNRSSSVDCDSGGPSGYTL
EALIKQLSQFYTLMSDHGLDPEISQQVVRQLFYCINAVSLNNLLLRKDMCSWSTGMQLRY
NISQMEEWLRGRNLHQKEVMLTIEPLIQAAQLLQVKKKTSQDAKAICSMCNILSTQQIVK
ILNLYTPLNEFEERVTVSFIRDIQNLLQGRIENSQLLVDTKHTFPVLFPYTPSALSLETL
HIPANLSLDFLVRV
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgaccaggagctctatgtcaagtacactcgggtttggatccctgacccggag
gaggtgtggaagcctgcagagatcgttaaagactacaaagagggagagtcggtcctgcac
ctcaaactcgaagatgaatcgacactggcgtatccaatcggtcctaaagacaacccactg
cctttccttcgaaatcccgacattctggtgggagaaaacgacctcacagccctcagctac
ctacacgaacctgcggtgctgcacaacctcaaggttcgcttcctggagtccaatcacatc
tacacttactgtggtattgtactggtggccattaatccatatgagcagctggccatttat
ggtgaggaggtcatcaatgcctacagcggccaaaacatgggtgacatggaccctcatata
tttgccgtggccgaggaggcttataaacagatggccagagatgaaaggaatcagtcgatc
attgtgagcggagaatcaggagctgggaagacggtatcagccaaatacgccatgcgctac
ttcgccactgtgggaggagccgccaatgacacaaacgtggaggagaaagtgctggcatcc
agccccatcatggaggctatcggaaacgcaaagacgacgcgcaacgacaacagcagccgc
ttcgggaaatacatccagatcggctttgacaggaggtatcacatcatcggcgccaacatg
cgcacgtacctgctggagaaatccagagtggtttttcaggctgaggatgagaggaactac
cacatcttctaccagctgtgtgcctctgcctcacgccctgagtttaaagatctggccttg
accagtgcagaagagttcacttacacctcgctaggacagaacatctttattccgggggtt
aatgatgatgtggacttacagaagacgcgggatgccttgaccatgctgggtgtgaaggaa
aatcaccagatgaacatctttcagataattgcctccatcttgcaccttgggaatgtggag
attgtttctgagagagacggagagtcatgtcatataaatagaaacgaccctcaccttctt
cacttctgcgagctgctggggatcgagaaggaccagatggaaaactggctgtgccgtaga
aagttagccacagcaacagagacctatgtaaagaacatgtcctccgtccaggcttctaac
gcccgcgacgctctggctaaacacatatacgcccatctgttcgactggattgtggagcac
atcaacaaagccctgcatacctccaccaaacagcactccttcatcggagtgttggatatt
tacgggtttgaaacttttgagattaacagcttcgagcagttctgcatcaactatgccaac
gagaaacttcagcaacagttcaactctcatgtttttaaactggagcaagaggagtacatg
aaggagcaaatcccatggacactcatcgacttctatgacaaccagccatgcatcgaccta
attgaggccaagctcggtatcctggacctgctggacgaagagtgcaaggtacctaaagga
acagatcagaactgggtgcagaagctctacggtcgacacacggccagcgagcactttgag
aagccgagaatgtccaacacatcgttcatcgtggtccactttgcagataaggttgagtat
cagtgtgaaggctttctggaaaagaacagggacaccgtatatgaagaacagatcaacatc
ctaaaggccagcaagttccagctagtggcagatctcttccaggaagaaaaatcagctcct
gcttctgcaggcaaaacctccaagatcaacgtacgtcctgcaaaaccaatgcccaaaagc
cacaaccgtgagcaccgcaaatctgtaggcacccagtttcggagttcattacatcttctg
atggagactctgaacgctacgactccacactatgtacgctgcataaaacccaacgacctt
aaagaagcctttgtgtttgattccaaaagagccgtccaacagcttcgagcatgtggtgtt
ctggagaccattcgcatcagcgctgcaggatatccatccaggtggacctactccgatttc
ttcagcaggtatcgcgtgctgatgaaaaagaaagacgtgactgccgacaagaagcaggtt
tgcaggtccctgctggagatgttgatcaaggatccagataagttccagttcggaaagact
aagatcttcttccgagccggtcaggtagcgtacctcgagaagctccgggccgacaagttc
cggttcgcctgcattaagatgcagaagaccgtgcgaggatggctgcagagaagacgctat
cagaagatccggaagtcggccatcttgctgcagagatacggccgcggcctcctggcgcgc
aggtatgcagaacagttgcgtctcacccgcgctgctctgatctgtcagaagcagtacagg
atggcgagggtccggcgcgcatatctgaccattcgcaaggctacgatcaccatccaggct
ttcacacggggcatgttcacacgccgcctgtaccaagagtacatgatgcaccacaaggcc
agcatcatccagagatgcgtgcgtagatggctgcataggaggaagttctgccgcgcccgg
gacgcagcggtggtgctgcagtgtgcttacaggcgtgtactcgccaggcgccggttcaat
cagctgaagatcgcggcgcgctccgcagaacacttcaagaatctcaacgtgggcatggag
aacaagatcgtgcagcttcggagaaagatggacgatcagaaacatgagtatatagtgcaa
aatgagaagctgtccgaagcgaacacggtgttggtcaccgaggtcagcaaactgcagaag
cagctggaggtggcacagaatcgtaaaggcgaatccacgcagctgagctcattgcaggat
gagttagagaaactaagggaggcgctacaggacgcacacgcccagaagaagaagctcgag
gaggagcacagcactgagaagcagggcctggagcagagagtccaggagctggagcgagaa
aattctctcctgaaggaggagaaagaagcgatgaaccagaagatccttcgccagtcgcag
agctccgggggaaaggatggcagtttgtctcagaaagaggctagtatacaggctgagctg
gatgatgagaggctgcgctatcagaacctgctgaaggagtttaaccgactggagcagaga
tatgaaaaccttcaagaggaggccacttatgccaaatttgttccaggtcatcgcaggagt
ccatccatccaaagcagcttgggctctgactccaccttcccttccatctccatgtctgag
gtgggagacactgaggacaccattcagcaggtggaggacatgggactggagaaggcagcc
aacgacatcagtgtgttcatgaagctgcagaaacgagtgcgagagctggagcaggagagg
aagaaacttcagaccaacctggagaagatggaggagctcagcaagcagaaagcgattgat
tcgaagatttcaacgtcagaggcagacacaaacgcagatctggcatacaacagtcttaag
aggcaagaactcgagtctgagaacaagaagctgaaaaacgacttgaacgaactgaggaag
tctctggttgagcgagcctccgagaactgctcatcgaacgaattgcaagacagctacaat
gttctgctcaatcaactcaaagcagccaacgaggagctggacgtacgcaaagaggaggtt
cttctgctaaaaacgcagatcgtcagcaccaccaagccttcagaaaacaccaatcacatc
aactccaccgacattgaatgggacagcaacaaaaagcctgtggagaaggaggaggtttta
caggcttaccagggtctcagtgaatccaagaggctgctggaaacacagctccaatcgcaa
aaccggaagcaccaagatgagctggaggctcttcacacgcaaatcgaggtgatgaaggag
gatctggagaagaagcaggagatgctcaatcactttagttcgctgtcccccgatgccctg
gtggagttcagcgtccagcaggagatcacacgcctcaccaatgaaaatctggacctgaaa
gaggtcatggagaagctggagaaaaatgagaggaagcttaaaaagcagctcaagatctac
atcaagaaagttcaagaacttgaagcatgtcaggcagcagtaaatcggcccaagctggtc
aggcaggtcacagtccagaggaaggagaaggactttgagggcatgctggagtactacaaa
gaggacgaggccctgctgatcagaatgcttatcacggacatgaagccccagatcgtttct
gccaccgtcccttgtctcccagcatacatcctcttcatgtgcatccgtcacgcagactac
atcaacaatgaccagaaagtgcattccctgctcacctccaccattaacgctatcaagaaa
cttctcaagaaaaacagtgaggacttcgagatgacttcattctggctggctaacacgagt
cgactcctgcactgcctcaaacaatacagcggagaggaggcattcatgacccagaacaca
tccaaacagaacgagcactgcctaaagaactttgacttggctgagtaccggcaggttctg
agtgacctgggcattcagatctaccagcagcttattagaatagccgagaccacgctgcag
cccatgatcgtgtcgtctatgctagagagcgggactctgactggtgtgaagcctctgggc
tacaggaaccgctcctcgagtgtggactgtgacagtggaggcccgtcaggctacactctg
gaggctctgatcaagcagctcagtcagttctacacactgatgagcgaccacggcctggac
cccgagatcagccagcaagtggtgcgccagctcttttactgcatcaatgcagtctcactc
aacaacctgctgttgcgcaaagatatgtgctcctggagcaccggcatgcagctcaggtac
aacattagtcagatggaggagtggttgaggggacgaaatcttcaccagaaggaagttatg
ttaaccatcgagccgctcatccaggctgcccagctgctacaggtgaaaaagaagacgtct
caggatgccaaggccatctgctccatgtgtaatattctcagcacacaacagattgtgaag
atcctgaatctatacactcccctgaatgagtttgaggagagggttactgtgtccttcatc
agagacatacagaatcttctacaaggtcgtatagagaacagccagctcttagtggatacc
aagcacacgttccccgtgctcttcccttacactccttcagctttgagcctggagaccctg
cacatccctgccaatctcagcctggacttcctcgtcagagtctga
DBGET
integrated database retrieval system
