Silurus meridionalis (southern catfish): 124397687
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Entry
124397687 CDS
T08004
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
smeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124397687 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
124397687 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124397687 (mnat1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124397687 (mnat1)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124397687 (mnat1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124397687 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
zf-C3HC4
TRAF3_RING
zf-UDP
zf-RING_2
zf-P11
Motif
Other DBs
NCBI-GeneID:
124397687
NCBI-ProteinID:
XP_046723288
LinkDB
All DBs
Position
2:complement(26996877..27006770)
Genome browser
AA seq
310 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCENCVEMLFVRGSGNCVQCDTPLRKSNFRL
QLFEDPAVDKEVEIRKKVLKLYNKRDLDFPSLREYNDYLEQVEEIVFNLTNNVDVENTKQ
MMEQYQRDNRDIIQRNKAKLTREQEELEEILLMEQQDLEIKRLENLQEEQRHLYTKRKNK
QALLDELENSNLPACLLLAQHKERAAQLDTQIEKQKQNVKPATIFSTGILMGQTVSLAPV
ARMEEVLYQYHPLQIKTYGPVVPELEQLARQGYLNHVRAATQQDLAGGYTSGLACHRAIQ
DAFSGLFPFV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcagggctgcccgagatgcaagacaacaaaatatagaaacccgtctttaaag
ctgatggtgaatgtttgcggacacacactgtgtgagaactgtgtggagatgttgtttgtg
cgaggttcaggcaactgtgttcagtgtgacactccgctcaggaagagcaacttccgcctg
caactcttcgaagatcctgctgtggacaaagaggttgagatccgcaagaaagtgctcaaa
ttatataataagcgtgatttggactttcctagtctgagggagtataacgactatctggag
caggtggaggaaatcgtgtttaacctgacgaataatgtggacgtggagaacaccaagcag
atgatggagcagtaccaaagagacaacagagacatcatccagagaaacaaggccaaactg
acgagggagcaggaggagctggaggagatcttgttgatggaacagcaggatctggagata
aagaggctggagaacttgcaggaggaacagaggcacttgtacaccaagaggaaaaacaaa
caggccctgttagatgagctggagaactccaatttgcctgcttgccttctcttggcacag
cataaagagcgagcagctcagctggatactcagatcgagaaacagaaacaaaacgtcaaa
ccagccaccatcttctctacaggcatactgatgggtcaaacagtgtcactggctccagtt
gctcgtatggaggaggttttgtatcagtatcaccctcttcaaatcaaaacgtatggccct
gtggtgcctgaactggaacagctggcaagacagggctatctgaatcatgtaagagcggcg
actcagcaggatttagcgggtggctatacatcaggtctggcgtgtcacagagccatacag
gacgccttcagtggtctgttcccctttgtataa
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integrated database retrieval system
