Silurus meridionalis (southern catfish): 124397704
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Entry
124397704 CDS
T08004
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03320
PPAR signaling pathway
smeo04148
Efferocytosis
smeo04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124397704 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
124397704 (rxraa)
03320 PPAR signaling pathway
124397704 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124397704 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124397704 (rxraa)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
124397704 (rxraa)
Nuclear receptors [BR:
smeo03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
124397704 (rxraa)
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
124397704
NCBI-ProteinID:
XP_046723321
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Position
15:3112603..3217351
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AA seq
541 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGESCSCFTGMCPLHQRRLSTESGQMISSPLSSP
TSHRPMHPSLLSPTSIGASGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMAYG
PSVSPQFMLDPTFHDDGRILDAVPQRLYRLGGGLAMQESAHCQHTYWLNSPMNSVSSSED
IKPPVGINGMMKLPAQSSGNPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKD
LTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREVFLHTAVQEERQRAKDRNENEVE
SSSSANEDMPVEKILEAELAVEPKTETYIETNLGVPSNSPNDPVTNICQAADKQLFTLVE
WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG
VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLE
AYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQM
T
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaagccattcttatcattggggttcctgaaaccccagtgctcgctggcgccg
ccccctcagagaggccgttcgggggaatcctgctcctgtttcaccggcatgtgtcctctc
catcagcgcagactctccacagaatcgggtcagatgatctcatctcctctgagctctccc
acatcccaccgtcccatgcacccttcccttctgagcccgacatccatcggagcctcggga
tccctgcattctcccattagcacactcagctcgccaatgaacggcctcggctctcctttc
tcagtcatcagctcacccatgggcccgcactccatggcatctcccggcatggcctatggc
cccagtgtaagcccacagttcatgctagaccctacttttcatgacgacggacggatcctg
gacgctgtaccacaaagactatacagacttggaggtggattggctatgcaggagtcagca
cactgtcagcatacatactggttgaactcgccgatgaactccgtgagcagctccgaggac
atcaagcctccggtgggcattaacggcatgatgaagttgccagcgcagtcctcggggaac
cctctgtctctcaccaaacacatctgtgccatttgcggggatcgctcctctggtaaacac
tacggcgtctacagctgtgagggctgcaaggggttctttaagcgaaccgtacggaaagac
ctgacctacacctgcagagacaacaaggactgcgtgatcgacaaacggcagcgaaaccgc
tgccaatactgccgctatcagaaatgcctggctatgggcatgaagagagaagtttttttg
catacagccgttcaggaggagcgacagcgagccaaggatcggaatgagaatgaggtggag
tcgagcagcagcgccaatgaggacatgcctgtggagaagatcctagaggccgaactggct
gttgagcccaagaccgagacatacatcgagaccaacctgggcgtgccgtccaattcgccc
aatgatccggtcactaatatttgccaagcagcagacaagcagctcttcaccctggtggag
tgggccaagaggatcccacacttctcagagctgcccctggacgatcaggtcatcctgcta
cgagcaggctggaatgagctgctgattgcatcgttctcgcatcgctcaatagctgtaaaa
gatggcattctgctggccaccgggctccacgtgcacagaaacagcgcccacagtgccgga
gtgggagccatattcgacagagtgctcacagagttggtgtcaaagatgagggacatgcag
atggataaaacagagctgggctgcctacgagccatagtgctgtttaatccagactctaaa
ggcctgtcaaaccccagtgaagtggaggctctgagggagaaggtttatgcctctctggaa
gcgtactgcaagcagaagtaccccgatcaacccgggaggtttgcgaagctgttactgcgg
cttcccgcactgcgttccatcggcctcaagtgtctagaacacttgttcttttttaagctc
atcggggacacacccatcgacaccttcctcatggagatgctggaggcgccccatcaaatg
acgtaa
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